RetrogeneDB ID: | retro_meug_1387 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold3872:17865..18447(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC17 | ||
Ensembl ID: | ENSMEUG00000005641 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 17 [Source:HGNC Symbol;Acc:25556] |
Percent Identity: | 75.51 % |
Parental protein coverage: | 80.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VKKAYRQ-KALTCHPDKNPDNPQAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDERRKK |
VKKAY.Q.KALTCHPDKNP.NPQA.ELFHQLSQ.L..LT.AAA.AAY...RKAKKQ.AER.QKLDERRKK | |
Retrocopy | VKKAYKQ<KALTCHPDKNPENPQAGELFHQLSQVLDMLTEAAAQAAYNNGRKAKKQEAERNQKLDERRKK |
Parental | VKLDLEARERQAQAQGSEVEEDNRSTRTLEQEIARLREEGSRQLEEQQRLIQEQIRQDREQRLKGKTENP |
.KLDL.A.ERQAQAQG.EVE....STRTLE..I..L.E.G.RQLEEQQRLIQEQI.QD.EQR..G.TE.P | |
Retrocopy | LKLDLGA*ERQAQAQGREVEQNSGSTRTLEEKISCLQE*GTRQLEEQQRLIQEQIGQDWEQRFQGRTEHP |
Parental | EGKGTPKLKLKWKCKKEDETKGGYSKDVLLRILQKYGE-VLNLVISSKKMGCAVVE |
EGK.TPKLKLKWKC.KEDE.K.GYSKD.LLRILQ.YGE..L.L.ISSKK.G.AV.E | |
Retrocopy | EGKATPKLKLKWKCPKEDENKCGYSKDILLRILQEYGE>MLSLLISSKKSGRAVAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020803 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000014110 | 1 retrocopy | |
Homo sapiens | ENSG00000104129 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000000051 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005641 | 2 retrocopies |
retro_meug_1387 , retro_meug_2001,
|
Myotis lucifugus | ENSMLUG00000014835 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013160 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034278 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003257 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006360 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006929 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012368 | 2 retrocopies |