Parental gene: | Dnajc17, ENSRNOG00000012368 |
| Aliases: | Dnajc17, RGD1308015 |
| Description: | dnaJ homolog subfamily C member 17 [Source:RefSeq peptide;Acc:NP_001178669] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:117530719..117564237(-) |
>ENSRNOG00000012368
ATGGCGGTGACCAAAGAGCTCTTACAAATGGATCTGTACGCGCTGCTGGGCATTGAAGAGAAGGCGGCAGACAAAGAGGT
GAAAAAGGCCTACAGGCAAAAAGCACTCTCCTGCCACCCAGACAAAAATCCAGATAACCCCAGAGCAGCTGAACTCTTCC
ACCAGCTGTCCCAGGCCTTGGAGGTACTGACTGATGCTGCAGCCAGGGCTGCATATGACAAGGTGAGGAAAGCCAGGAAG
CAGGCTGCAGAGAGGACCCAGAGACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGACCTGGAAGCCAGGGAGCGGCAGGC
CCAGGCCCAGGGTACTGAGGAAGAGGAGGAGAGCAGGAGCACCACCACACTAGAGCAGGAGATTGCTCGCCTTCGAGAAG
AGGGTTCCCGTCAACTGGAAGAGCAGCAAAGGCTGATCCAGGAGCAGATCCGCCAGGACCGAGAACAGAGGCTGAGAGGA
AGAACCGAAAATACAGAAGGCAAAGGAACCCCCAAACTAAAGCTGAAGTGGAAGTGCAAGAAGGAGGATGAGTCCCAGGG
TGGCTACTCCAGAGACATCCTCCTGAGGCTTTTACAAAAGTATGGGGAGGTTCTCAACTTGGTACTTTCCAAAAAGAAGG
CAGGCAACGCCATAGTGGAGTTTGCAACTGTCAGAGCGGCGGAGCTGGCCGTCAGAAATGAAGTGGGCCTGGCTGACAAC
CCTCTGAAGGTTTCCTGGTTGGAGGGACAGCCCCAGGGCACAGTGGACCCCAGCCCCCCAGGACTGTCGAAGGGCTCAGT
GCTGTCAGAAAGGGACTATGAGAGTCTGGTCATGATGCGCATGCGCCAGGCCGCTGAGCGCCAGCAGCTGATTGCCCAGA
TGCAGCAGGAAGATGAGGGGCGGCCCACGTAG
ATGGCGGTGACCAAAGAGCTCTTACAAATGGATCTGTACGCGCTGCTGGGCATTGAAGAGAAGGCGGCAGACAAAGAGGT
GAAAAAGGCCTACAGGCAAAAAGCACTCTCCTGCCACCCAGACAAAAATCCAGATAACCCCAGAGCAGCTGAACTCTTCC
ACCAGCTGTCCCAGGCCTTGGAGGTACTGACTGATGCTGCAGCCAGGGCTGCATATGACAAGGTGAGGAAAGCCAGGAAG
CAGGCTGCAGAGAGGACCCAGAGACTTGATGAGAAAAGGAAGAAAGTGAAGCTTGACCTGGAAGCCAGGGAGCGGCAGGC
CCAGGCCCAGGGTACTGAGGAAGAGGAGGAGAGCAGGAGCACCACCACACTAGAGCAGGAGATTGCTCGCCTTCGAGAAG
AGGGTTCCCGTCAACTGGAAGAGCAGCAAAGGCTGATCCAGGAGCAGATCCGCCAGGACCGAGAACAGAGGCTGAGAGGA
AGAACCGAAAATACAGAAGGCAAAGGAACCCCCAAACTAAAGCTGAAGTGGAAGTGCAAGAAGGAGGATGAGTCCCAGGG
TGGCTACTCCAGAGACATCCTCCTGAGGCTTTTACAAAAGTATGGGGAGGTTCTCAACTTGGTACTTTCCAAAAAGAAGG
CAGGCAACGCCATAGTGGAGTTTGCAACTGTCAGAGCGGCGGAGCTGGCCGTCAGAAATGAAGTGGGCCTGGCTGACAAC
CCTCTGAAGGTTTCCTGGTTGGAGGGACAGCCCCAGGGCACAGTGGACCCCAGCCCCCCAGGACTGTCGAAGGGCTCAGT
GCTGTCAGAAAGGGACTATGAGAGTCTGGTCATGATGCGCATGCGCCAGGCCGCTGAGCGCCAGCAGCTGATTGCCCAGA
TGCAGCAGGAAGATGAGGGGCGGCCCACGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 3 .09 RPM |
| SRP017611_kidney | 6 .35 RPM |
| SRP017611_brain | 4 .75 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000020803 | ortholog_many2many | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000014110 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000104129 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000051 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005641 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014835 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013160 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000034278 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003257 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006360 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006929 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_18 | 89.40 | 99.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2319 | 84.10 | 92.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000012368 retrocopies