Parental gene:

RNF138, ENSCJAG00000020875

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:69618887..69662309(+)


>ENSCJAG00000020875
ATGGCCGAAGAGCTCTCCGCGGCCACTTCCTACACCGAGGATGATTTCTACTGCCCAGTCTGTCAGGAGGTGCTCAAAAC
GCCCGTACGGACTGCGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATT
GTCCCCTATGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCCGAACGGGCTTTAGACCTTGAAAATATCATGAGG
AAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAA
GTATCAGGATGAATATGGTGTTTCTTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGTAATAGGA
GTGAAACATCTACATCTGATAACACGGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCCACTTTTAAGTGTCCC
CTGTGTCAAGAATCAAATTTTACCAGGCAGCGTTTACTGGATCACTGTAACAGTAATCACCTATTTCAGATAATTCCTGT
GACATGTCCCATTTGTGTGTCTCTTCCTTGGGGAGATCCTCGCCAGATAACTAGAAATTTTGTTAGTCATCTAAATCAAA
GACATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACCCAGTATCAAACTGCTGTTGAAGAATCT
TTTCAAGTAAACATCTGA

Library Parental gene expression (RPM)
SRP051959_colon 13 .05 RPM
SRP051959_heart 6 .52 RPM
SRP051959_kidney 7 .52 RPM
SRP051959_liver 9 .05 RPM
SRP051959_lung 10 .64 RPM
SRP051959_lymph_node 17 .42 RPM
SRP051959_skeletal_muscle 2 .64 RPM
SRP051959_spleen 15 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020160 ortholog_one2one 1 retrogene
retro_btau_322,
Choloepus hoffmanni ENSCHOG00000012689 ortholog_one2one 6 retrogenes
retro_chof_1043, retro_chof_1242, retro_chof_1931, retro_chof_418, retro_chof_714, retro_chof_793,
Felis catus ENSFCAG00000014180 ortholog_one2one 2 retrogenes
retro_fcat_1383, retro_fcat_379,
Homo sapiens ENSG00000134758 ortholog_one2one 1 retrogene
retro_hsap_3319,
Gorilla gorilla ENSGGOG00000027857 ortholog_one2one 1 retrogene
retro_ggor_1302,
Loxodonta africana ENSLAFG00000003811 ortholog_one2one 1 retrogene
retro_lafr_408,
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mustela putorius furo ENSMPUG00000006982 ortholog_one2one 1 retrogene
retro_mputfur_276,
Nomascus leucogenys ENSNLEG00000006401 ortholog_one2one 1 retrogene
retro_nleu_1665,
Pongo abelii ENSPPYG00000009094 ortholog_one2one 1 retrogene
retro_pabe_2734,
Pan troglodytes ENSPTRG00000009956 ortholog_one2one 1 retrogene
retro_ptro_2155,
Pteropus vampyrus ENSPVAG00000003778 ortholog_one2one 2 retrogenes
retro_pvam_1316, retro_pvam_1379,
Rattus norvegicus ENSRNOG00000015645 ortholog_one2one 3 retrogenes
retro_rnor_2316, retro_rnor_808, retro_rnor_965,
Ictidomys tridecemlineatus ENSSTOG00000002293 ortholog_one2one 2 retrogenes
retro_itri_1443, retro_itri_576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2325 93.12 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000020875 retrocopies