Parental gene:

RNF138, ENSPTRG00000009956

Aliases:None
Description:ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:18:27820645..27864754(+)


>ENSPTRG00000009956
ATGGCCGAGGACCTCTCTGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGGTGCTCAAAAC
GCCCGTGCGGACCACGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATT
GTCCCCTATGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGG
AAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAACAGATTAAATTCTATCGCATGAGACATCATTACAAATCTTGTAAGAA
GTATCAGGATGAATATGGTGTTTCTTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGCAATAGGA
GTGAAACATCCACATCTGATAACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTTTAAGTGTCCC
CTGTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGATCACTGTAACAGTAATCACCTATTTCAGATAGTTCCTGT
GACATGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGTTAGTCATCTAAATCAGA
GACATCAATTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACCCAATATCAAACTGCTGTTGAAGAATCT
TTTCAAGTAAACATCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .95 RPM
SRP007412_cerebellum 4 .02 RPM
SRP007412_heart 1 .57 RPM
SRP007412_kidney 5 .65 RPM
SRP007412_liver 4 .12 RPM
SRP007412_testis 84 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020160 ortholog_one2one 1 retrogene
retro_btau_322,
Choloepus hoffmanni ENSCHOG00000012689 ortholog_one2one 6 retrogenes
retro_chof_1043, retro_chof_1242, retro_chof_1931, retro_chof_418, retro_chof_714, retro_chof_793,
Callithrix jacchus ENSCJAG00000020875 ortholog_one2one 1 retrogene
retro_cjac_2325,
Felis catus ENSFCAG00000014180 ortholog_one2one 2 retrogenes
retro_fcat_1383, retro_fcat_379,
Homo sapiens ENSG00000134758 ortholog_one2one 1 retrogene
retro_hsap_3319,
Gorilla gorilla ENSGGOG00000027857 ortholog_one2one 1 retrogene
retro_ggor_1302,
Loxodonta africana ENSLAFG00000003811 ortholog_one2one 1 retrogene
retro_lafr_408,
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mustela putorius furo ENSMPUG00000006982 ortholog_one2one 1 retrogene
retro_mputfur_276,
Nomascus leucogenys ENSNLEG00000006401 ortholog_one2one 1 retrogene
retro_nleu_1665,
Pongo abelii ENSPPYG00000009094 ortholog_one2one 1 retrogene
retro_pabe_2734,
Pteropus vampyrus ENSPVAG00000003778 ortholog_one2one 2 retrogenes
retro_pvam_1316, retro_pvam_1379,
Rattus norvegicus ENSRNOG00000015645 ortholog_one2one 3 retrogenes
retro_rnor_2316, retro_rnor_808, retro_rnor_965,
Ictidomys tridecemlineatus ENSSTOG00000002293 ortholog_one2one 2 retrogenes
retro_itri_1443, retro_itri_576,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2155 93.50 100.00
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Download FASTA sequences of all ENSPTRG00000009956 retrocopies