Parental gene:

RNF138, ENSSTOG00000002293

Aliases:None
Description:ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393492.1:1175975..1205003(-)


>ENSSTOG00000002293
ATGGCCGAGGAGCTGTCCGCGGCCACGGCCTACACAGAAGATGATTTCTACTGCCCGGTCTGTCAGGAGGTGCTGAAAAC
GCCCGTGCGGACCGCGGCCTGTCAGCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGAGAAAGTGGAATACATT
GTCCCCTGTGTCGTGGAAATGTGACTAGAAGAGAAAGAGCGTGTCCAGAACGGGCCTTAGATCTTGAAAATATCATGAGG
AAGTTTTCTGGTAGCTGTAGATGCTGTGCAAAACAGATTAAATTCTATCGTATGAGACATCATTATAAATCTTGTAAGAA
GTATCAGGATGAATATGGTGTTTCTTCTATTATTCCAAACTTTCAGATATCTCAAGATTCAGTAGGGAATAGTAATAGGA
GTGAAACATCCACATCTGATAACACAGAAACTTACCAAGAGAATACAAGTTCTGGGAATCCCACCTTTAAGTGTCCCTTG
TGTCAAGAGTCAAATTTTACTAGACAGCGTTTACTTGATCACTGTAACAGTAACCACCTATTTCAGATAGTTCCTGTGAC
ATGTCCTATTTGTGTGTCTCTTCCTTGGGGAGATCCTAGCCAGATTACTAGAAATTTCGTTAGTCATCTAAATCAAAGAC
ATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACCCAATATCAAACTGCTGTTGAAGAATCTTTT
CAAGTAAACATCTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020160 ortholog_one2one 1 retrogene
retro_btau_322,
Choloepus hoffmanni ENSCHOG00000012689 ortholog_one2one 6 retrogenes
retro_chof_1043, retro_chof_1242, retro_chof_1931, retro_chof_418, retro_chof_714, retro_chof_793,
Callithrix jacchus ENSCJAG00000020875 ortholog_one2one 1 retrogene
retro_cjac_2325,
Felis catus ENSFCAG00000014180 ortholog_one2one 2 retrogenes
retro_fcat_1383, retro_fcat_379,
Homo sapiens ENSG00000134758 ortholog_one2one 1 retrogene
retro_hsap_3319,
Gorilla gorilla ENSGGOG00000027857 ortholog_one2one 1 retrogene
retro_ggor_1302,
Loxodonta africana ENSLAFG00000003811 ortholog_one2one 1 retrogene
retro_lafr_408,
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mustela putorius furo ENSMPUG00000006982 ortholog_one2one 1 retrogene
retro_mputfur_276,
Nomascus leucogenys ENSNLEG00000006401 ortholog_one2one 1 retrogene
retro_nleu_1665,
Pongo abelii ENSPPYG00000009094 ortholog_one2one 1 retrogene
retro_pabe_2734,
Pan troglodytes ENSPTRG00000009956 ortholog_one2one 1 retrogene
retro_ptro_2155,
Pteropus vampyrus ENSPVAG00000003778 ortholog_one2one 2 retrogenes
retro_pvam_1316, retro_pvam_1379,
Rattus norvegicus ENSRNOG00000015645 ortholog_one2one 3 retrogenes
retro_rnor_2316, retro_rnor_808, retro_rnor_965,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_576 88.16 61.48
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2. retro_itri_1443 51.09 54.51
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Download FASTA sequences of all ENSSTOG00000002293 retrocopies