Parental gene: | RBM22, ENSCJAG00000020963 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:48178987..48188353(-) |
>ENSCJAG00000020963
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAAGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAAAGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCGTTCACAG
TGTTTCGCTGGTGCCCCGGAGTCCGTATGCGTTTCAAGAAGACTGAGGTGTGCCAGACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGCAGGCCTGCCCATCCAGGTTCGTGATGCAGGATTGTCTTTTAAAGATGA
CATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGC
CAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGG
AATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAAAGAGGAGAGGAATGTCCATACAGACATGAGAAGCC
TACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATACTACGGAATCAATGATCCTGTAGCTGACAAGC
TTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCGGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTG
GGTGATACTATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAAAG
ACAGCAGTGTGCTTTCATCCAGTTTGCCACGAGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTG
TAAATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACCACA
GACTCTGGGATCAAACTGGAACCAGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCAGCAGAAGAAGAAGCCTC
TGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCCCTGCCACCACCCCCTGGTATCGCCC
CACCCCCCCCACCAGGTTTTGGGTCACACATGTTCCACCCAATGGGACCACCCCCTCCCTTCATGAGGGCTCCAGGACCA
ATCCACTATCCTTCTCAGGACCCTCAGCGGATGGGAGCTCATGCTGGAAAACACAGCAGTCCCTAG
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAAGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAAAGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCGTTCACAG
TGTTTCGCTGGTGCCCCGGAGTCCGTATGCGTTTCAAGAAGACTGAGGTGTGCCAGACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGCAGGCCTGCCCATCCAGGTTCGTGATGCAGGATTGTCTTTTAAAGATGA
CATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGC
CAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGG
AATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAAAGAGGAGAGGAATGTCCATACAGACATGAGAAGCC
TACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATACTACGGAATCAATGATCCTGTAGCTGACAAGC
TTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCGGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTG
GGTGATACTATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAAAG
ACAGCAGTGTGCTTTCATCCAGTTTGCCACGAGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTG
TAAATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACCACA
GACTCTGGGATCAAACTGGAACCAGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCAGCAGAAGAAGAAGCCTC
TGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCCCTGCCACCACCCCCTGGTATCGCCC
CACCCCCCCCACCAGGTTTTGGGTCACACATGTTCCACCCAATGGGACCACCCCCTCCCTTCATGAGGGCTCCAGGACCA
ATCCACTATCCTTCTCAGGACCCTCAGCGGATGGGAGCTCATGCTGGAAAACACAGCAGTCCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 9 .05 RPM |
| SRP051959_skeletal_muscle | 8 .23 RPM |
| SRP051959_lymph_node | 11 .03 RPM |
| SRP051959_lung | 9 .08 RPM |
| SRP051959_liver | 5 .33 RPM |
| SRP051959_kidney | 7 .10 RPM |
| SRP051959_heart | 5 .68 RPM |
| SRP051959_colon | 5 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018082 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000001946 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011166 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000086589 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012947 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009040 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000020683 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000009574 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011086 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015955 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000017423 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000003939 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_990 | 93.80 | 65.08 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1338 | 97.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2471 | 95.99 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3342 | 68.90 | 70.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3390 | 68.90 | 70.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3934 | 70.13 | 70.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020963 retrocopies