RetrogeneDB ID: | retro_mmul_1762 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:45007494..45008312(+) | ||
Located in intron of: | ENSMMUG00000021377 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4422 | ||
Ensembl ID: | ENSMMUG00000020683 | ||
Aliases: | None | ||
Description: | pre-mRNA-splicing factor RBM22 [Source:RefSeq peptide;Acc:NP_001244425] |
Percent Identity: | 65.59 % |
Parental protein coverage: | 65.32 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDP |
KAT.TSDMLL..A.TTP.Y.R..PH.CSFWVK.ECKRGEEC..RH.KP.DPDD.LADQNI...YYGINDP | |
Retrocopy | KATLTSDMLLNPAWTTPSYQRSKPHLCSFWVKEECKRGEECLCRHKKPIDPDDLLADQNITHKYYGINDP |
Parental | VADKLLKRASTMPRLDPPEDKTI-TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR |
..DK.LK.ASTMP.LD.P........LYVG.LG.TI.ETDLR.H.YQFGE...ITVVQR.QCAFIQ..T. | |
Retrocopy | ETDKHLK*ASTMPHLD-PSEDKV>SSLYVGSLGNTISETDLRHHHYQFGEMQMITVVQREQCAFIQVSTG |
Parental | QAAEVAAEKSFNKLIVNGRRLNV-KWGRSQAARGKEKEKDGTTDSGIKLEPVPGLPGALPPPPAAEEEAS |
Q.AEVAAEKSFNKLIVNG.RLN..K.G.......K.K......DSGI.L.P.P.LP.ALP.P.AAE..AS | |
Retrocopy | QSAEVAAEKSFNKLIVNGCRLNI<KMGKIPRIQRKRKTEQ-MADSGIQLQPIPALP*ALPLPTAAED-AS |
Parental | ANYFNLPPSGPPAVVNIA-LPPPPGIAPPPP-PGFGPHMFHPMGPPPPFMRAPGPIHYPSQDPQRMGAH |
AN.FNLP..GPPAVVN.A..PP.P....P.P..GF.PH.F..MGPP.PFMR.PG.IHY.S.DPQRMG.H | |
Retrocopy | ANCFNLPQHGPPAVVNAAHQPPAPSLLHP*P<LGFRPHIFTSMGPPLPFMRTPGLIHYLSHDPQRMGKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 34 .06 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .54 RPM |
SRP007412_cerebellum | 0 .06 RPM | 41 .39 RPM |
SRP007412_heart | 0 .06 RPM | 15 .02 RPM |
SRP007412_kidney | 0 .12 RPM | 29 .34 RPM |
SRP007412_liver | 0 .00 RPM | 11 .20 RPM |
SRP007412_testis | 0 .15 RPM | 25 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3465 |
Pan troglodytes | retro_ptro_2348 |
Gorilla gorilla | retro_ggor_2337 |
Pongo abelii | retro_pabe_2861 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018082 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020963 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000001946 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011166 | 1 retrocopy | |
Homo sapiens | ENSG00000086589 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000012947 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009040 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020683 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000009574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015955 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000017423 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000003939 | 3 retrocopies |