Parental gene:

PRPF38A, ENSCJAG00000021594

Aliases:None
Description:PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:87657255..87670520(-)


>ENSCJAG00000021594
ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCTCAATATCTGGTAGAGAAGATCATTCGAAC
GCGAATCTATGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTCACGGCTGAACTTGTAGTTGATAAAGCCATGGAGT
TAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAGATT
CAGCCTGAGAAGGATATCATTGTAGAGTTTATCAAAAATGAAGATTTCAAGTATGTCCGCATGTTAGGGGCACTTTACAT
GAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTATAATGACTATCGAAAAATCAAGAGCCAGA
ACCGAAATGGGGAGTTTGAATTGATGCATGTAGATGAGTTTATTGATGAACTATTGCACAGTGAAAGAGTCTGTGATATC
ATTTTGCCCCGGCTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGA
CATGGACGATGTGGAGTCCAGTGAAGAGGAAGAGGAAGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACCGTC
GGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGAAGGAGTAGGAGTCGGTCTCCCAGA
AGGCGAAGCCGATCTCCCAAAAGGAGAAGCCCCTCCCCCCGTCGAGAAAGGCATCGAAGCAAGAGTCCAAGACGTCACCG
CAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCTAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACT
CCAAGTCTCCTGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .39 RPM
SRP051959_skeletal_muscle 7 .95 RPM
SRP051959_lymph_node 12 .15 RPM
SRP051959_lung 11 .47 RPM
SRP051959_liver 6 .52 RPM
SRP051959_kidney 7 .52 RPM
SRP051959_heart 8 .70 RPM
SRP051959_colon 9 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000013904 ortholog_one2one 1 retrogene
retro_dnov_443,
Homo sapiens ENSG00000134748 ortholog_one2one 2 retrogenes
retro_hsap_541, retro_hsap_545,
Gorilla gorilla ENSGGOG00000003940 ortholog_one2one 4 retrogenes
retro_ggor_493, retro_ggor_494, retro_ggor_496, retro_ggor_563,
Loxodonta africana ENSLAFG00000025862 ortholog_one2one 1 retrogene
retro_lafr_794,
Myotis lucifugus ENSMLUG00000001053 ortholog_one2one 8 retrogenes
retro_mluc_1105, retro_mluc_1208, retro_mluc_1856, retro_mluc_2016, retro_mluc_2150, retro_mluc_2405, retro_mluc_2576, retro_mluc_828,
Monodelphis domestica ENSMODG00000000644 ortholog_one2many 1 retrogene
retro_mdom_184,
Mus musculus ENSMUSG00000063800 ortholog_one2one 2 retrogenes
retro_mmus_1227, retro_mmus_671,
Nomascus leucogenys ENSNLEG00000017999 ortholog_one2one 2 retrogenes
retro_nleu_715, retro_nleu_719,
Oryctolagus cuniculus ENSOCUG00000000963 ortholog_one2one 1 retrogene
retro_ocun_713,
Otolemur garnettii ENSOGAG00000005423 ortholog_one2one 1 retrogene
retro_ogar_3216,
Petromyzon marinus ENSPMAG00000005561 ortholog_one2one 1 retrogene
retro_pmar_28,
Pongo abelii ENSPPYG00000001348 ortholog_one2one 2 retrogenes
retro_pabe_500, retro_pabe_503,
Pan troglodytes ENSPTRG00000000739 ortholog_one2one 2 retrogenes
retro_ptro_406, retro_ptro_410,
Pteropus vampyrus ENSPVAG00000009803 ortholog_one2one 1 retrogene
retro_pvam_967,
Sus scrofa ENSSSCG00000003858 ortholog_one2one 1 retrogene
retro_sscr_924,
Ictidomys tridecemlineatus ENSSTOG00000015610 ortholog_one2many 1 retrogene
retro_itri_1564,
Taeniopygia guttata ENSTGUG00000008995 ortholog_one2one 3 retrogenes
retro_tgut_12, retro_tgut_13, retro_tgut_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2862 73.37 53.53
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Download FASTA sequences of all ENSCJAG00000021594 retrocopies