Parental gene: | PRPF38A, ENSGGOG00000003940 |
| Aliases: | None |
| Description: | None |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 1:54068331..54087484(+) |
>ENSGGOG00000003940
ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCACGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAAC
GCGAATCTACGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGT
TAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATT
CAACCCGAGAAGGATATCATTGTAGAGTTTATAAAAAACGAAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTACAT
GAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGA
ACCGAAATGGGGAGTTTGAATTGATGCATGTTGATGAGTTTATTGATGAACTGTTGCACAGTGAGAGAGTCTGTGATATC
ATTCTGCCCCGACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGA
CATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACCGCC
GGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGGAGGAGTAGGAGCCGGTCTCCCAGA
AGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCG
CAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACT
CAAAGTCTCCCGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAA
ATGGCTAACCGTACAGTGAAGGATGCGCACAGCATCCACGGCACCAACCCTCAATATCTGGTGGAGAAGATCATTCGAAC
GCGAATCTACGAGTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACAGCTGAACTTGTAGTCGATAAAGCCATGGAGT
TAAGGTTTGTGGGTGGCGTCTATGGTGGCAACATAAAACCAACACCCTTTCTGTGTTTAACCTTGAAGATGCTTCAAATT
CAACCCGAGAAGGATATCATTGTAGAGTTTATAAAAAACGAAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTACAT
GAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGA
ACCGAAATGGGGAGTTTGAATTGATGCATGTTGATGAGTTTATTGATGAACTGTTGCACAGTGAGAGAGTCTGTGATATC
ATTCTGCCCCGACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAGGA
CATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACCGCC
GGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGGAGGAGTAGGAGCCGGTCTCCCAGA
AGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAGGCATCGGAGCAAGAGTCCAAGACGTCACCG
CAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACT
CAAAGTCTCCCGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .39 RPM |
| SRP007412_cerebellum | 28 .76 RPM |
| SRP007412_heart | 5 .66 RPM |
| SRP007412_kidney | 25 .96 RPM |
| SRP007412_liver | 15 .88 RPM |
| SRP007412_testis | 36 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000021594 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013904 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000134748 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000025862 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001053 | ortholog_one2one | 8 retrogenes | |
| Monodelphis domestica | ENSMODG00000000644 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000063800 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017999 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000963 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005423 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000005561 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001348 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000739 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009803 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000003858 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000015610 | ortholog_one2many | 1 retrogene | |
| Taeniopygia guttata | ENSTGUG00000008995 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_493 | 86.58 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ggor_494 | 86.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ggor_496 | 89.24 | 50.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ggor_563 | 86.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSGGOG00000003940 retrocopies