RetrogeneDB ID: | retro_dnov_443 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4761:134594..135236(+) | ||
Located in intron of: | ENSDNOG00000004477 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPF38A | ||
Ensembl ID: | ENSDNOG00000013904 | ||
Aliases: | None | ||
Description: | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930] |
Percent Identity: | 68.78 % |
Parental protein coverage: | 69.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECF-GLTAELVVDKAMELRFVGGVYGGNIKPTP-FLCLT |
.D..SIHGT.PQYLVEKII....YESKYW.E....GLTA.LVVDKAMELRFV.GV.G..IKPTP..LCLT | |
Retrocopy | QDGNSIHGTTPQYLVEKIIQA*VYESKYWREGIL<GLTAKLVVDKAMELRFVDGVHGDSIKPTP>ILCLT |
Parental | LKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHV |
LKML.IQP.KD..V.FIKNE.F.YV.MLGAL.MRL.GTAIDC...LEPLYND..KIKSQ.RNG..E.MHV | |
Retrocopy | LKMLHIQPKKDTTVGFIKNEHFEYVHMLGALCMRLMGTAIDCCESLEPLYNDS*KIKSQKRNGKLEQMHV |
Parental | DEFIDELLHSER-VCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDD-VESSEEEEEEDEKLERVPSPDH |
DE..DELLH.ER...DI.L.RLQ.R.VL.EAE.LEP.VSALEED.D....S..EEE..DE..E.VPSPDH | |
Retrocopy | DE-CDELLHRER<MGDISLCRLQQRSVLDEAEPLEPQVSALEEDVDG>GPSEGEEE--DEQAEGVPSPDH |
Parental | RRRSYRDLDKP |
..R..RD.DKP | |
Retrocopy | HPRRDRDMDKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 10 .31 RPM |
SRP012922_heart | 0 .00 RPM | 3 .48 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .65 RPM |
SRP012922_liver | 0 .00 RPM | 6 .19 RPM |
SRP012922_lung | 0 .15 RPM | 15 .27 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4 .33 RPM |
SRP012922_spleen | 0 .00 RPM | 18 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000021594 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013904 | 1 retrocopy |
retro_dnov_443 ,
|
Homo sapiens | ENSG00000134748 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003940 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000025862 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001053 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000000644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063800 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000963 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005423 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000005561 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001348 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000739 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009803 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003858 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015610 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000008995 | 3 retrocopies |