Parental gene:

RPS8, ENSCPOG00000000723

Aliases:None
Description:40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:H0UUK1]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_165:1028258..1030102(+)


>ENSCPOG00000000723
GCAGGCATCTCTCGGGACAACTGGCATAAACGCCGCAAGACCGGGGGCAAAAGAAAGCCCTATCACAAGAAGCGGAAGTA
TGAGTTGGGTCGCCCTGCTGCCAACACCAAGATTGGCCCCCGCCGAATACACACAGTCCGAGTTCGAGGAGGCAATAAGA
AGTACCGAGCCCTGAGGCTGGATGTGGGAAACTTCTCCTGGGGCTCTGAGTGTTGTACTCGAAAAACAAGGATCATTGAC
GTTGTTTACAATGCATCCAATAATGAGCTGGTCCGCACCAAGACCCTGGTGAAGAACTGCATTGTGCTCATTGACAGCAC
ACCGTACCGACAGTGGTACGAATCACACTATGCACTGCCCCTGGGCCGCAAGAAGGGGGCCAAGCTGACTCCTGAGGAGG
AAGAGATTTTAATCAGCAGTCTTCTGGAGGAGCAGTTCCAGCAGGGCAAGCTTCTTGCCTGCATTGCATCAAGACCAGGC
CAGTGTGGCAGAGCAGACGGCTATGTGCTAGAGGGCAAGGAGCTGGAGTTCTATCTGAGGAAAATCAAGGCCCGGAAAGG
CAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 204 .18 RPM
SRP017611_kidney 317 .10 RPM
SRP017611_liver 171 .58 RPM
SRP040447_lung 379 .62 RPM
SRP040447_skeletal_muscle 475 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015285 ortholog_one2one 2 retrogenes
retro_btau_1388, retro_btau_1593,
Canis familiaris ENSCAFG00000004745 possible_ortholog 8 retrogenes
retro_cfam_1336, retro_cfam_1662, retro_cfam_1730, retro_cfam_2139, retro_cfam_2177, retro_cfam_261, retro_cfam_589, retro_cfam_791,
Callithrix jacchus ENSCJAG00000004197 possible_ortholog 5 retrogenes
retro_cjac_1068, retro_cjac_181, retro_cjac_3138, retro_cjac_6, retro_cjac_951,
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
retro_dord_429,
Felis catus ENSFCAG00000022996 possible_ortholog 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Gorilla gorilla ENSGGOG00000005645 possible_ortholog 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 possible_ortholog 2 retrogenes
retro_mmul_275, retro_mmul_70,
Nomascus leucogenys ENSNLEG00000014147 possible_ortholog 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 ortholog_one2one 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pongo abelii ENSPPYG00000001426 possible_ortholog 1 retrogene
retro_pabe_147,
Pan troglodytes ENSPTRG00000000659 possible_ortholog 1 retrogene
retro_ptro_30,
Pteropus vampyrus ENSPVAG00000009859 ortholog_one2one 10 retrogenes
retro_pvam_1285, retro_pvam_1315, retro_pvam_1345, retro_pvam_403, retro_pvam_419, retro_pvam_463, retro_pvam_514, retro_pvam_578, retro_pvam_685, retro_pvam_991,
Rattus norvegicus ENSRNOG00000018768 possible_ortholog 2 retrogenes
retro_rnor_222, retro_rnor_235,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_335 70.91 57.45
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2. retro_cpor_621 60.00 52.66
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3. retro_cpor_1099 67.86 71.81
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Download FASTA sequences of all ENSCPOG00000000723 retrocopies