RetrogeneDB ID: | retro_cjac_3138 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:55076399..55076960(-) | ||
Located in intron of: | ENSCJAG00000013927 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000004197 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:F6PPW3] |
Percent Identity: | 93.58 % |
Parental protein coverage: | 89.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELV |
HKK.K.ELGRPAANTKIGPRRIHTV.VRG.NKKYRALRLDVGNFSWGSECCTRKTR.IDVVYNASNNELV | |
Retrocopy | HKKPK*ELGRPAANTKIGPRRIHTVCVRGSNKKYRALRLDVGNFSWGSECCTRKTRVIDVVYNASNNELV |
Parental | RTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSL |
RTKTLVKNCIVLIDSTPY.QWY.SHYALPLG.KKGAKLTPEEEEILNKKR..KIQKKYDERKKNAKISSL | |
Retrocopy | RTKTLVKNCIVLIDSTPY*QWYQSHYALPLGCKKGAKLTPEEEEILNKKRFRKIQKKYDERKKNAKISSL |
Parental | LEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
LEEQFQQGKLLAC.ASR.GQCGRADGYVLEGKELEFYLRKIKARKGK | |
Retrocopy | LEEQFQQGKLLACKASRLGQCGRADGYVLEGKELEFYLRKIKARKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .55 RPM | 239 .34 RPM |
SRP051959_heart | 0 .46 RPM | 225 .64 RPM |
SRP051959_kidney | 0 .60 RPM | 199 .52 RPM |
SRP051959_liver | 0 .48 RPM | 312 .58 RPM |
SRP051959_lung | 0 .54 RPM | 272 .22 RPM |
SRP051959_lymph_node | 1 .00 RPM | 439 .66 RPM |
SRP051959_skeletal_muscle | 0 .35 RPM | 314 .27 RPM |
SRP051959_spleen | 0 .76 RPM | 381 .72 RPM |