RetrogeneDB ID: | retro_cfam_791 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:10342327..10342711(+) | ||
Located in intron of: | ENSCAFG00000003571 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSCAFG00000004745 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 55.3 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | HKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRI |
.K...T.GK.KPYH.K.K.ELGRPAANT.IG....H.V....G.K....LRL.V....W.SE....KTR. | |
Retrocopy | YKCHGTRGKSKPYHRKGK*ELGRPAANTRIGSHHTHPVCFHRGQKESHGLRLGVEDIPWDSEDPKCKTRV |
Parental | IDVVYNASNNELVR-TKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKG-AKLTPEEEEILN |
.DVVYNASNNE.V...KTLVKNC.VL..ST..R.W.ESHYA..LG...G...L.P.E.EIL. | |
Retrocopy | TDVVYNASNNEPVH<PKTLVKNCMVLTGSTVPRRW*ESHYA--LGPQEG>SMLAP*EQEILS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 459 .42 RPM |
SRP017611_brain | 0 .00 RPM | 158 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 1224 .13 RPM |
SRP017611_liver | 0 .00 RPM | 281 .50 RPM |