Parental gene:

ENSCJAG00000004197

Aliases:None
Description:40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:F6PPW3]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:79541053..79544927(+)


>ENSCJAG00000004197
ATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTA
TGAGTTGGGGCGCCCGGCTGCCAACACCAAGATTGGCCCCCGCCGCATCCACACAGTCCGTGTGCGGGGCGGTAACAAGA
AATACCGTGCCCTGAGGCTAGACGTGGGAAATTTCTCCTGGGGCTCAGAGTGTTGTACTAGAAAAACAAGGATCATTGAT
GTTGTCTATAATGCATCTAATAACGAGCTGGTCCGTACCAAGACCCTGGTGAAGAATTGCATTGTGCTCATCGACAGCAC
GCCATACCGACAGTGGTACGAGTCCCACTATGCGCTGCCCCTGGGCCGCAAGAAGGGAGCCAAGCTGACTCCTGAGGAAG
AAGAGATTTTAAACAAAAAACGATCTAAAAAAATTCAGAAGAAATACGACGAAAGGAAAAAGAATGCCAAAATCAGCAGT
CTACTGGAGGAGCAGTTCCAGCAGGGCAAGCTTCTTGCATGCATCGCTTCAAGGCCGGGACAGTGTGGCCGAGCAGATGG
CTATGTGCTAGAGGGCAAAGAGTTGGAGTTCTATCTTAGGAAAATCAAGGCCCGGAAAGGCAAATAA

Library Parental gene expression (RPM)
SRP051959_colon 239 .34 RPM
SRP051959_heart 225 .64 RPM
SRP051959_kidney 199 .52 RPM
SRP051959_liver 312 .58 RPM
SRP051959_lung 272 .22 RPM
SRP051959_lymph_node 439 .66 RPM
SRP051959_skeletal_muscle 314 .27 RPM
SRP051959_spleen 381 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015697 ortholog_one2many 1 retrogene
retro_acar_124,
Ailuropoda melanoleuca ENSAMEG00000014147 possible_ortholog 3 retrogenes
retro_amel_1883, retro_amel_373, retro_amel_972,
Bos taurus ENSBTAG00000015285 possible_ortholog 2 retrogenes
retro_btau_1388, retro_btau_1593,
Canis familiaris ENSCAFG00000004745 possible_ortholog 8 retrogenes
retro_cfam_1336, retro_cfam_1662, retro_cfam_1730, retro_cfam_2139, retro_cfam_2177, retro_cfam_261, retro_cfam_589, retro_cfam_791,
Choloepus hoffmanni ENSCHOG00000008785 ortholog_one2many 10 retrogenes
retro_chof_1197, retro_chof_1258, retro_chof_1466, retro_chof_1638, retro_chof_2066, retro_chof_2617, retro_chof_2633, retro_chof_274, retro_chof_331, retro_chof_951,
Cavia porcellus ENSCPOG00000000723 possible_ortholog 3 retrogenes
retro_cpor_1099, retro_cpor_335, retro_cpor_621,
Dasypus novemcinctus ENSDNOG00000025236 possible_ortholog 3 retrogenes
retro_dnov_1717, retro_dnov_802, retro_dnov_908,
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
retro_dord_429,
Echinops telfairi ENSETEG00000004002 possible_ortholog 13 retrogenes
retro_etel_1000, retro_etel_1063, retro_etel_1201, retro_etel_147, retro_etel_1495, retro_etel_1733, retro_etel_1864, retro_etel_1941, retro_etel_2050, retro_etel_2060, retro_etel_302, retro_etel_368, retro_etel_395,
Felis catus ENSFCAG00000022996 possible_ortholog 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Homo sapiens ENSG00000142937 possible_ortholog 8 retrogenes
retro_hsap_1467, retro_hsap_1536, retro_hsap_1942, retro_hsap_2034, retro_hsap_2791, retro_hsap_3158, retro_hsap_3410, retro_hsap_635,
Gorilla gorilla ENSGGOG00000005645 possible_ortholog 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Loxodonta africana ENSLAFG00000027596 ortholog_one2many 3 retrogenes
retro_lafr_531, retro_lafr_647, retro_lafr_904,
Macropus eugenii ENSMEUG00000001388 possible_ortholog 1 retrogene
retro_meug_119,
Microcebus murinus ENSMICG00000008024 possible_ortholog 4 retrogenes
retro_mmur_1180, retro_mmur_1434, retro_mmur_1501, retro_mmur_380,
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 ortholog_one2one 2 retrogenes
retro_mmul_275, retro_mmul_70,
Monodelphis domestica ENSMODG00000028389 ortholog_one2many 1 retrogene
retro_mdom_998,
Mustela putorius furo ENSMPUG00000013485 possible_ortholog 6 retrogenes
retro_mputfur_334, retro_mputfur_337, retro_mputfur_493, retro_mputfur_780, retro_mputfur_908, retro_mputfur_986,
Mus musculus ENSMUSG00000047675 ortholog_one2many 33 retrogenes
retro_mmus_1003, retro_mmus_1067, retro_mmus_1184, retro_mmus_1694, retro_mmus_1755, retro_mmus_1796, retro_mmus_2001, retro_mmus_2002, retro_mmus_2003, retro_mmus_2031, retro_mmus_2132, retro_mmus_2173, retro_mmus_2264, retro_mmus_2732, retro_mmus_2772, retro_mmus_2847, retro_mmus_2861, retro_mmus_293, retro_mmus_2956, retro_mmus_2998, retro_mmus_3018, retro_mmus_3052, retro_mmus_3057, retro_mmus_3279, retro_mmus_3307, retro_mmus_3521, retro_mmus_364, retro_mmus_392, retro_mmus_548, retro_mmus_559, retro_mmus_596, retro_mmus_646, retro_mmus_876,
Nomascus leucogenys ENSNLEG00000014147 possible_ortholog 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pongo abelii ENSPPYG00000001426 ortholog_one2one 1 retrogene
retro_pabe_147,
Pan troglodytes ENSPTRG00000000659 possible_ortholog 1 retrogene
retro_ptro_30,
Pteropus vampyrus ENSPVAG00000009859 possible_ortholog 10 retrogenes
retro_pvam_1285, retro_pvam_1315, retro_pvam_1345, retro_pvam_403, retro_pvam_419, retro_pvam_463, retro_pvam_514, retro_pvam_578, retro_pvam_685, retro_pvam_991,
Rattus norvegicus ENSRNOG00000018768 ortholog_one2many 2 retrogenes
retro_rnor_222, retro_rnor_235,
Sorex araneus ENSSARG00000000899 possible_ortholog 1 retrogene
retro_sara_462,
Sarcophilus harrisii ENSSHAG00000000111 possible_ortholog 5 retrogenes
retro_shar_408, retro_shar_472, retro_shar_480, retro_shar_636, retro_shar_667,
Sus scrofa ENSSSCG00000003930 possible_ortholog 4 retrogenes
retro_sscr_353, retro_sscr_550, retro_sscr_607, retro_sscr_919,
Ictidomys tridecemlineatus ENSSTOG00000006322 possible_ortholog 3 retrogenes
retro_itri_1337, retro_itri_1380, retro_itri_750,
Tupaia belangeri ENSTBEG00000000418 possible_ortholog 20 retrogenes
retro_tbel_1066, retro_tbel_1537, retro_tbel_1538, retro_tbel_163, retro_tbel_1699, retro_tbel_2356, retro_tbel_244, retro_tbel_2580, retro_tbel_3058, retro_tbel_3230, retro_tbel_3478, retro_tbel_3905, retro_tbel_3950, retro_tbel_4241, retro_tbel_4250, retro_tbel_4530, retro_tbel_552, retro_tbel_803, retro_tbel_827, retro_tbel_934,
Tarsius syrichta ENSTSYG00000005525 possible_ortholog 5 retrogenes
retro_tsyr_1412, retro_tsyr_1507, retro_tsyr_2176, retro_tsyr_552, retro_tsyr_734,
Tursiops truncatus ENSTTRG00000003388 possible_ortholog 4 retrogenes
retro_ttru_1839, retro_ttru_282, retro_ttru_300, retro_ttru_344,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_6 97.12 100.00
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2. retro_cjac_181 98.08 100.00
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3. retro_cjac_951 77.27 92.79
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4. retro_cjac_1068 78.95 99.04
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5. retro_cjac_3138 93.58 89.90
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Download FASTA sequences of all ENSCJAG00000004197 retrocopies