Parental gene:

HNRNPH1, ENSCPOG00000001485

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_176:381882..389524(+)


>ENSCPOG00000001485
ATGATGCTGGGCACCGAAGGCGGAGAGGGGTTCGTGGTGAAGGTGCGGGGTTTGCCTTGGTCCTGCTCGGCCGACGAGGT
GCAGCGGTTCTTCTCCGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAG
TCGGGCTGAAGTTAGAACTCACTATGACCCGCCACGAAAGCTTATGGCCATGCAGCGGCCAGGCCCCTATGACAGACCTG
GGGCTGGCAGAGGGTATAACAGCATTGGCAGAGGAGCTGGCTTTGAGAGGATGAGGCGTGGTGCCTATGGTGGAGGCTAT
GGAGGCTATGATGATTACAACGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGCTCTACTTTCCAGAGCACAACTGGACATTGTGTGCACATGC
GGGGATTACCATACCGAGCTACCGAGAATGACATTTATAATTTCTTTTCACCGCTCAACCCTGTGAGAGTACACATTGAG
ATAGGTCCTGATGGGAGAGTTACTGGGGAAGCAGATGTTGAATTCGCAACTCATGAAGATGCTGTTGCAGCCATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATG
GGCTTGTCAAACCAGTCCAGTTATGGTGGCCCGGCCAGCCAGCAGCTGAGCGGTGGCTATGGAGGCGGCTACGGCGGCCA
GAGCAGCATGAGTGGCTACGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG

Library Parental gene expression (RPM)
SRP017611_brain 141 .49 RPM
SRP017611_kidney 229 .06 RPM
SRP017611_liver 90 .23 RPM
SRP040447_lung 338 .31 RPM
SRP040447_skeletal_muscle 85 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008888 ortholog_one2one 2 retrogenes
retro_amel_57, retro_amel_9,
Bos taurus ENSBTAG00000009389 possible_ortholog 1 retrogene
retro_btau_130,
Choloepus hoffmanni ENSCHOG00000003841 possible_ortholog 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Callithrix jacchus ENSCJAG00000009931 ortholog_one2one 1 retrogene
retro_cjac_127,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Felis catus ENSFCAG00000001204 ortholog_one2one 2 retrogenes
retro_fcat_131, retro_fcat_27,
Homo sapiens ENSG00000169045 ortholog_one2one 2 retrogenes
retro_hsap_3322, retro_hsap_4911,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Monodelphis domestica ENSMODG00000009436 possible_ortholog 3 retrogenes
retro_mdom_1301, retro_mdom_1302, retro_mdom_333,
Otolemur garnettii ENSOGAG00000012631 ortholog_one2one 2 retrogenes
retro_ogar_208, retro_ogar_498,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pongo abelii ENSPPYG00000016121 ortholog_one2one 1 retrogene
retro_pabe_110,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Rattus norvegicus ENSRNOG00000003399 ortholog_one2one 1 retrogene
retro_rnor_340,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 possible_ortholog 1 retrogene
retro_shar_674,
Sus scrofa ENSSSCG00000014022 ortholog_one2one 1 retrogene
retro_sscr_70,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_121 75.00 91.09
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2. retro_cpor_711 94.58 53.01
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3. retro_cpor_1065 95.42 53.01
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4. retro_cpor_1094 84.62 91.98
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5. retro_cpor_1095 87.92 91.98
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Download FASTA sequences of all ENSCPOG00000001485 retrocopies