Parental gene: | HNRNPH1, ENSCPOG00000001485 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_176:381882..389524(+) |
>ENSCPOG00000001485
ATGATGCTGGGCACCGAAGGCGGAGAGGGGTTCGTGGTGAAGGTGCGGGGTTTGCCTTGGTCCTGCTCGGCCGACGAGGT
GCAGCGGTTCTTCTCCGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAG
TCGGGCTGAAGTTAGAACTCACTATGACCCGCCACGAAAGCTTATGGCCATGCAGCGGCCAGGCCCCTATGACAGACCTG
GGGCTGGCAGAGGGTATAACAGCATTGGCAGAGGAGCTGGCTTTGAGAGGATGAGGCGTGGTGCCTATGGTGGAGGCTAT
GGAGGCTATGATGATTACAACGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGCTCTACTTTCCAGAGCACAACTGGACATTGTGTGCACATGC
GGGGATTACCATACCGAGCTACCGAGAATGACATTTATAATTTCTTTTCACCGCTCAACCCTGTGAGAGTACACATTGAG
ATAGGTCCTGATGGGAGAGTTACTGGGGAAGCAGATGTTGAATTCGCAACTCATGAAGATGCTGTTGCAGCCATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATG
GGCTTGTCAAACCAGTCCAGTTATGGTGGCCCGGCCAGCCAGCAGCTGAGCGGTGGCTATGGAGGCGGCTACGGCGGCCA
GAGCAGCATGAGTGGCTACGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG
ATGATGCTGGGCACCGAAGGCGGAGAGGGGTTCGTGGTGAAGGTGCGGGGTTTGCCTTGGTCCTGCTCGGCCGACGAGGT
GCAGCGGTTCTTCTCCGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTTAAGAGCAG
TCGGGCTGAAGTTAGAACTCACTATGACCCGCCACGAAAGCTTATGGCCATGCAGCGGCCAGGCCCCTATGACAGACCTG
GGGCTGGCAGAGGGTATAACAGCATTGGCAGAGGAGCTGGCTTTGAGAGGATGAGGCGTGGTGCCTATGGTGGAGGCTAT
GGAGGCTATGATGATTACAACGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGCTCTACTTTCCAGAGCACAACTGGACATTGTGTGCACATGC
GGGGATTACCATACCGAGCTACCGAGAATGACATTTATAATTTCTTTTCACCGCTCAACCCTGTGAGAGTACACATTGAG
ATAGGTCCTGATGGGAGAGTTACTGGGGAAGCAGATGTTGAATTCGCAACTCATGAAGATGCTGTTGCAGCCATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATG
GGCTTGTCAAACCAGTCCAGTTATGGTGGCCCGGCCAGCCAGCAGCTGAGCGGTGGCTATGGAGGCGGCTACGGCGGCCA
GAGCAGCATGAGTGGCTACGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 90 .23 RPM |
| SRP017611_kidney | 229 .06 RPM |
| SRP017611_brain | 141 .49 RPM |
| SRP040447_lung | 338 .31 RPM |
| SRP040447_skeletal_muscle | 85 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008888 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000009389 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000003841 | possible_ortholog | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009931 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000014429 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000011303 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000001204 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000169045 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016625 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000010843 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009436 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000012631 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000003513 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000006715 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016121 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000007670 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003399 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000003024 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000018204 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000014022 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000007485 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_121 | 75.00 | 91.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_711 | 94.58 | 53.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_1065 | 95.42 | 53.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_1094 | 84.62 | 91.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cpor_1095 | 87.92 | 91.98 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000001485 retrocopies