Parental gene:

HNRNPH1, ENSCJAG00000009931

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:59221608..59232047(-)


>ENSCJAG00000009931
ATGATGTTGGGCACCGAAGGTGGAGAGGGATTCGTGGTGAAGGTCCGGGGGTTGCCCTGGTCTTGCTCGGCCGATGAAGT
GCAGAGGTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGTCTTAGAGGACTTCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAAATCTTTAAGAGCAG
TAGAGCTGAAGTTAGAACTCACTATGACCCACCACGAAAGCTTATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTG
GGGCTGGCAGAGGATATAACAGCATTGGCAGAGGAGCAGGCTTTGAAAGGATGAGGCGTGGTGCTTATGGTGGAGGCTAT
GGAGGCTATGATGATTACAATGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCTGATCACAGATACGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACACTGTGTACACATGC
GTGGATTACCTTACAGAGCTACTGAGAATGACATTTACAATTTTTTTTCACCACTCAATCCTGTGAGAGTACACATTGAA
ATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTCGAGTTTGCAACTCATGAAGATGCTGTGGCAGCTATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATG
GGCTTGTCAAACCAGTCCAGTTATGGTGGCCCAGCCAGCCAGCAGCTGAGTGGTGGTTATGGAGGCGGCTATGGTGGCCA
GAGCAGCATGAGTGGATACGGTAGCCAAGGAGCAATGAACAGCAGCTACTACAGTAGTGGAAGCCGTGCATCTTTGGGCG
TGAATGGAATGGGAGGGATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 220 .23 RPM
SRP051959_skeletal_muscle 116 .09 RPM
SRP051959_lymph_node 285 .70 RPM
SRP051959_lung 207 .54 RPM
SRP051959_liver 148 .38 RPM
SRP051959_kidney 164 .13 RPM
SRP051959_heart 135 .69 RPM
SRP051959_colon 104 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008888 ortholog_one2one 2 retrogenes
retro_amel_57, retro_amel_9,
Bos taurus ENSBTAG00000009389 possible_ortholog 1 retrogene
retro_btau_130,
Canis familiaris ENSCAFG00000000336 possible_ortholog 2 retrogenes
retro_cfam_200, retro_cfam_230,
Choloepus hoffmanni ENSCHOG00000003841 possible_ortholog 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Callithrix jacchus ENSCJAG00000019154 within_species_paralog 2 retrogenes
retro_cjac_292, retro_cjac_578,
Cavia porcellus ENSCPOG00000001485 ortholog_one2one 5 retrogenes
retro_cpor_1065, retro_cpor_1094, retro_cpor_1095, retro_cpor_121, retro_cpor_711,
Dipodomys ordii ENSDORG00000005453 possible_ortholog 1 retrogene
retro_dord_3,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Felis catus ENSFCAG00000001204 ortholog_one2one 2 retrogenes
retro_fcat_131, retro_fcat_27,
Homo sapiens ENSG00000169045 ortholog_one2one 2 retrogenes
retro_hsap_3322, retro_hsap_4911,
Gorilla gorilla ENSGGOG00000025844 possible_ortholog 2 retrogenes
retro_ggor_1299, retro_ggor_177,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Monodelphis domestica ENSMODG00000009436 possible_ortholog 3 retrogenes
retro_mdom_1301, retro_mdom_1302, retro_mdom_333,
Mustela putorius furo ENSMPUG00000000693 possible_ortholog 1 retrogene
retro_mputfur_156,
Mus musculus ENSMUSG00000007850 possible_ortholog 1 retrogene
retro_mmus_142,
Nomascus leucogenys ENSNLEG00000026658 possible_ortholog 3 retrogenes
retro_nleu_1668, retro_nleu_28, retro_nleu_48,
Otolemur garnettii ENSOGAG00000012631 ortholog_one2one 2 retrogenes
retro_ogar_208, retro_ogar_498,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pongo abelii ENSPPYG00000016121 ortholog_one2one 1 retrogene
retro_pabe_110,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Rattus norvegicus ENSRNOG00000003399 ortholog_one2one 1 retrogene
retro_rnor_340,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 possible_ortholog 1 retrogene
retro_shar_674,
Sus scrofa ENSSSCG00000014022 ortholog_one2one 1 retrogene
retro_sscr_70,
Ictidomys tridecemlineatus ENSSTOG00000016376 possible_ortholog 2 retrogenes
retro_itri_66, retro_itri_78,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_127 75.06 91.31
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Download FASTA sequences of all ENSCJAG00000009931 retrocopies