Parental gene:

ISCA1, ENSCPOG00000011872

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_11:15730447..15747785(+)


>ENSCPOG00000011872
ATGTCGGCTTCCTTAGTCCGGGCCACCGTCCGGGCTGTGAGCAAGAGAAAACTGCAGCCCACCCGCGCCGCCCTTACGCT
GACACCTTCTGCAGTAAACAAGATAAAACAGCTTCTTCAAGATAAACCTGAGCATGTAGGTTTGAAAGTTGGTGTCCGAA
CCAGGGGCTGTAATGGCCTTTCCTACACTCTAGAATACACAAAAACAAAAGGAGATTCTGATGAAGAAGTTGTTCAAGAC
GGAGTCAGAGTGTTCATCGAAAAGAAAGCACAGCTGACACTTTTAGGCACAGAAATGGACTATGTTGAAGACAAATTATC
CAGTGAGTTTGTCTTCAATAACCCGAATATCAAAGGAACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA

Library Parental gene expression (RPM)
SRP017611_brain 50 .33 RPM
SRP017611_kidney 69 .09 RPM
SRP017611_liver 49 .40 RPM
SRP040447_lung 29 .63 RPM
SRP040447_skeletal_muscle 64 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046526 possible_ortholog 2 retrogenes
retro_btau_1787, retro_btau_506,
Callithrix jacchus ENSCJAG00000001940 possible_ortholog 6 retrogenes
retro_cjac_1623, retro_cjac_1734, retro_cjac_1870, retro_cjac_2608, retro_cjac_350, retro_cjac_672,
Dasypus novemcinctus ENSDNOG00000010652 possible_ortholog 5 retrogenes
retro_dnov_1162, retro_dnov_142, retro_dnov_1956, retro_dnov_431, retro_dnov_95,
Echinops telfairi ENSETEG00000016537 possible_ortholog 1 retrogene
retro_etel_1857,
Gorilla gorilla ENSGGOG00000007518 possible_ortholog 2 retrogenes
retro_ggor_1182, retro_ggor_92,
Microcebus murinus ENSMICG00000003889 ortholog_one2one 1 retrogene
retro_mmur_1399,
Monodelphis domestica ENSMODG00000003559 ortholog_one2one 1 retrogene
retro_mdom_583,
Mus musculus ENSMUSG00000044792 ortholog_one2many 1 retrogene
retro_mmus_278,
Otolemur garnettii ENSOGAG00000015628 ortholog_one2one 5 retrogenes
retro_ogar_1267, retro_ogar_1545, retro_ogar_2186, retro_ogar_2813, retro_ogar_935,
Pongo abelii ENSPPYG00000019339 possible_ortholog 5 retrogenes
retro_pabe_1287, retro_pabe_2043, retro_pabe_2744, retro_pabe_2745, retro_pabe_367,
Rattus norvegicus ENSRNOG00000018343 ortholog_one2one 4 retrogenes
retro_rnor_1177, retro_rnor_1805, retro_rnor_2254, retro_rnor_2956,
Tarsius syrichta ENSTSYG00000012826 possible_ortholog 2 retrogenes
retro_tsyr_1060, retro_tsyr_1698,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_768 75.31 61.24
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2. retro_cpor_1383 52.94 65.89
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Download FASTA sequences of all ENSCPOG00000011872 retrocopies