Parental gene:

PABPC3, ENSCPOG00000012917

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:15689724..15700727(+)


>ENSCPOG00000012917
GCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCC
ATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATTTGGACAAATCCATTGATAATAAAGCACTGTATGATA
CATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATGAAAATGGGTCCAAGGGCTATGGATTTGTACAT
TTTGAGACGCAAGAAGCCGCTGAAAGAGCTATTGAAAAAATGAATGGGATGCTTCTAAATGATCGCAAAGTATTTGTTGG
ACGATTTAAGTCTCGTAAAGAGCGAGAAGCAGAACTTGGAGCTAGGGCAAAAGAATTCACCAATGTTTACATCAAGAATT
TTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGTTTGGACCTGCTCTAAGTGTGAAAGTAATGACT
GATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTGAGCTTTGAAAGGCATGAAGATGCACAGAAAGCTGTGGATGAGAT
GAATGGAAAGGAGCTCAATGGAAAACAAATATACGTTGGTCGAGCTCAGAAAAAAGTGGAACGCCAGACGGAACTTAAGC
GCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTGTTAACCTCTATGTGAAAAATCTCGATGATGGT
ATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCTTTTGGTACAATCACTAGCGCAAAGGTTATGATGGAGGGTGGTCG
CAGCAAAGGATTTGGTTTTGTGTGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTTACAGAAATGAATGGTAGAATTG
TGGCCACCAAGCCACTATATGTAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTCACTAACCAGTATATGCAG
AGGATGGCGAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTACCAGCCAGCGCCTCCTTCAGGTTACTTCATGGC
AGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCAAATTGCTCAACTAAGACCAAGTCCTCGCTGGA
CTGCTCAGGGTGCCAGACCTCATCCATTCCAGAATATGCCCGGTGCTATCCGCCCAGCCGCTCCTAGACCACCATTCAGT
ACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCGACACAGCGTGTTGCAAACACATCAACACAGACAATGGG
TCCGCGTCCTGCAGCTGCTGCCGCTGCAGCTACTCCTGCTGTCCGCACCGTCCCCCAGTATAAATATGCTGCGGGAGTCC
GCAATCCTCAGCAGCATCTCAATGCACAGCCCCAGGTCACCATGCAGCAGCCTGCTGTTCATGTACAAGGTCAGGAACCT
TTGACTGCTTCCATGTTGGCATCTGCCCCCCCTCAAGAGCAAAAGCAAATGTTGGGTGAACGGCTGTTTCCACTTATTCA
AGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTCACATGCTGG
AGTCTCCAGAGTCTCTCCGTTCTAAGGTTGATGAAGCCGTAGCTGTACTACAAGCCCACCAAGCTAAAGAGGCTGCTCAG
AAAGCAGTGAACAGTGCCACTGGAGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 138 .61 RPM
SRP017611_kidney 281 .61 RPM
SRP017611_liver 180 .38 RPM
SRP040447_lung 660 .94 RPM
SRP040447_skeletal_muscle 97 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 ortholog_one2one 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 ortholog_one2one 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 possible_ortholog 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000002044 other_paralog 1 retrogene
retro_cpor_1379,
Cavia porcellus ENSCPOG00000009552 within_species_paralog 2 retrogenes
retro_cpor_1330, retro_cpor_77,
Dasypus novemcinctus ENSDNOG00000008718 ortholog_one2one 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 ortholog_one2one 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 ortholog_one2one 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 ortholog_one2one 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 possible_ortholog 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_one2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 possible_ortholog 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Oryctolagus cuniculus ENSOCUG00000004354 ortholog_one2one 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Rattus norvegicus ENSRNOG00000008639 possible_ortholog 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_one2many 1 retrogene
retro_shar_24,
Tarsius syrichta ENSTSYG00000004229 ortholog_one2one 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1324 62.23 54.90
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Download FASTA sequences of all ENSCPOG00000012917 retrocopies