Parental gene:

ENSCJAG00000015833

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:93892640..93912752(+)


>ENSCJAG00000015833
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTAACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTTTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCTGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGAAAAAGTGGAGTGGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCATTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAAAGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAACGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTACGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTTCGTAAAGAATTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCTAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCCCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAATATGCTGCGGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAAGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTTCTCTTGCTGGTAAAATCACTGGTATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTTGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCTCAGAAAGCCGTTAACAGTGCCACCGGTGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
SRP051959_colon 64 .39 RPM
SRP051959_heart 55 .83 RPM
SRP051959_kidney 49 .21 RPM
SRP051959_liver 70 .90 RPM
SRP051959_lung 87 .34 RPM
SRP051959_lymph_node 84 .11 RPM
SRP051959_skeletal_muscle 31 .93 RPM
SRP051959_spleen 123 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 possible_ortholog 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 possible_ortholog 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000002512 within_species_paralog 3 retrogenes
retro_cjac_214, retro_cjac_2722, retro_cjac_284,
Callithrix jacchus ENSCJAG00000010803 other_paralog 1 retrogene
retro_cjac_1022,
Callithrix jacchus ENSCJAG00000014861 other_paralog 1 retrogene
retro_cjac_1040,
Cavia porcellus ENSCPOG00000012917 possible_ortholog 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 possible_ortholog 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 possible_ortholog 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 possible_ortholog 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 possible_ortholog 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 ortholog_one2one 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_many2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 ortholog_one2one 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Nomascus leucogenys ENSNLEG00000003142 ortholog_one2one 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000004354 possible_ortholog 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 ortholog_one2one 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 ortholog_one2one 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_many2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000006063 ortholog_one2one 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Ictidomys tridecemlineatus ENSSTOG00000016395 possible_ortholog 2 retrogenes
retro_itri_139, retro_itri_48,
Tarsius syrichta ENSTSYG00000004229 possible_ortholog 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,
Tursiops truncatus ENSTTRG00000004689 ortholog_one2one 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 ortholog_one2one 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_41 96.38 100.00
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2. retro_cjac_1586 89.12 64.94
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3. retro_cjac_2571 89.78 100.00
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4. retro_cjac_3218 86.19 80.82
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5. retro_cjac_4039 85.06 100.00
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Download FASTA sequences of all ENSCJAG00000015833 retrocopies