Parental gene:

MMU.3044, ENSMMUG00000017786

Aliases:None
Description:polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001244826]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:103217114..103235805(-)


>ENSMMUG00000017786
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAA
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAACGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTACGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAATATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCTGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACCGGTGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
SRP007412_brain 44 .82 RPM
SRP007412_brain_prefrontal_cortex 93 .45 RPM
SRP007412_cerebellum 49 .34 RPM
SRP007412_heart 52 .23 RPM
SRP007412_kidney 91 .31 RPM
SRP007412_liver 157 .39 RPM
SRP007412_testis 975 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 possible_ortholog 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 possible_ortholog 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 ortholog_one2one 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000012917 possible_ortholog 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 possible_ortholog 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 possible_ortholog 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 possible_ortholog 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 possible_ortholog 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000007497 within_species_paralog 1 retrogene
retro_mmul_178,
Monodelphis domestica ENSMODG00000006222 ortholog_many2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 ortholog_one2one 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Nomascus leucogenys ENSNLEG00000003142 ortholog_one2one 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000004354 possible_ortholog 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 ortholog_one2one 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 ortholog_one2one 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_many2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000006063 ortholog_one2one 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Ictidomys tridecemlineatus ENSSTOG00000016395 possible_ortholog 2 retrogenes
retro_itri_139, retro_itri_48,
Tarsius syrichta ENSTSYG00000004229 possible_ortholog 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,
Tursiops truncatus ENSTTRG00000004689 ortholog_one2one 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 ortholog_one2one 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_895 99.13 90.25
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2. retro_mmul_1462 82.93 90.41
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Download FASTA sequences of all ENSMMUG00000017786 retrocopies