Parental gene:

ENSFCAG00000001874

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:F2:46176951..46189075(-)


>ENSFCAG00000001874
ATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGT
GGGCAACATATTCATTAAAAATTTGGACAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACA
TCCTTTCATGTAAGGTGGTTTGTGATGAAAATGGTTCCAAAGGTTATGGATTTGTACATTTTGAGACACAGGAAGCAGCT
GAAAGAGCTATTGAAAAAATGAATGGGATGCTTCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGA
ACGAGAAGCAGAACTCGGAGCTAGGGCAAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGAGAAGATATGGATGATG
AGCGCCTTAAGGATCTCTTTGGCAAGTTTGGACCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAA
GGTTTTGGATTTGTAAGCTTCGAAAGGCATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGGAAGGAGCTCAATGG
AAAACAAATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGC
AAGATAGGATCACCAGATACCAGGGTGTTAACCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGG
AAAGAGTTTTCTCCTTTTGGTACAATCACTAGTGCAAAGGTCATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGT
ATGTTTCTCCTCCCCAGAAGAAGCCACAAAAGCAGTTACAGAAATGAATGGTAGAATTGTGGCCACCAAGCCATTGTATG
TAGCTTTAGCTCAGCGCAAAGAAGAGCGCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTCCGAGCT
GTGCCCAATCCTGTAATCAACCCCTACCAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAA
CCGTGCTGCGTACTACCCTCCTAGCCAGATTGCTCAACTCAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTC
ATCCATTCCAAAATATGCCCGGTGCTATCCGCCCAGCCGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCA
CAGGTTCCACGAGTCATGTCCACACAGCGTGTTGCTAACACGTCAACACAGACGATGGGTCCACGTCCTGCAGCTGCTGC
TGCTGCAGCCACTCCTGCGGTCCGCACCGTTCCACAGTATAAGTACGCCGCCGGGGTCCGCAATCCGCAGCAGCATCTGA
ATGCACAGCCGCAAGTTACCATGCAGCAGCCTGCTGTCCACGTACAAGGTCAGGAGCCTTTGACTGCTTCCATGTTGGCA
TCTGCCCCTCCTCAAGAGCAAAAGCAAATGTTGGGTGAGCGGCTCTTTCCTCTAATTCAAGCCATGCACCCTACTCTTGC
TGGTAAAATCACTGGCATGTTGTTGGAGATTGATAATTCAGAACTTCTTCATATGCTGGAGTCTCCAGAGTCTCTCCGTT
CTAAAGTTGATGAAGCTGTAGCCGTACTACAAGCCCACCAAGCGAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACT
GGTGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 118 .79 RPM
SRP017611_kidney 393 .17 RPM
SRP017611_liver 532 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 ortholog_one2one 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 ortholog_one2one 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 possible_ortholog 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000012917 ortholog_one2one 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 ortholog_one2one 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000015254 within_species_paralog 2 retrogenes
retro_fcat_116, retro_fcat_545,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 ortholog_one2one 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 ortholog_one2one 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 possible_ortholog 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_one2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 possible_ortholog 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Oryctolagus cuniculus ENSOCUG00000004354 ortholog_one2one 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Rattus norvegicus ENSRNOG00000008639 possible_ortholog 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_one2many 1 retrogene
retro_shar_24,
Tarsius syrichta ENSTSYG00000004229 ortholog_one2one 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1927 64.50 54.16
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Download FASTA sequences of all ENSFCAG00000001874 retrocopies