Parental gene:

FUNDC1, ENSCPOG00000012962

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_33:13715089..13732485(+)


>ENSCPOG00000012962
ATGGCGTCCCGGAACCCCCCTCCCCAAGAATATGAAAGTGATGACGACTCTTACGAAGTGTTGGATTTAACAGAGTATGC
AAGAAGACATCACTGGTGGAATCGAGTGTTTGGCCACCGATCAGGACCTATGGTAGAAAAATACTCAGTAGCTACCCAGA
TTGTAATGGGTGGTGTGACTGGCTGGTGTGCAGGATTTTTGTTCCAGAAAGTTGGAAAACTTGCAGCAACAGCAGTAGGT
GGTGGCTTTCTTCTCCTACAGATTGCCAGTCACAGTGGCTATGTTCAGATCGACTGGAAGAGAGTTGAAAAAGATGTAAA
CAAAGCAAAAAGACAAATTAAGAAACGAGCAAATAAAGCAGCGCCTGAAATCAACAATGTAATCGAAGAAGCAACAGAAT
TTATCAAACAGAACATTGTGATATCCAGTGGATTCGTGGGAGGATTTTTGCTTGGCCTTGCATCTTAA

Library Parental gene expression (RPM)
SRP017611_liver 4 .35 RPM
SRP017611_kidney 7 .96 RPM
SRP017611_brain 8 .28 RPM
SRP040447_lung 6 .08 RPM
SRP040447_skeletal_muscle 6 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000010876 ortholog_one2one 1 retrogene
retro_cjac_896,
Echinops telfairi ENSETEG00000012763 ortholog_one2one 3 retrogenes
retro_etel_1614, retro_etel_697, retro_etel_852,
Homo sapiens ENSG00000069509 ortholog_one2one 1 retrogene
retro_hsap_936,
Gorilla gorilla ENSGGOG00000023311 ortholog_one2one 1 retrogene
retro_ggor_755,
Latimeria chalumnae ENSLACG00000010215 ortholog_one2one 1 retrogene
retro_lcha_74,
Macropus eugenii ENSMEUG00000006795 ortholog_one2one 5 retrogenes
retro_meug_1597, retro_meug_2127, retro_meug_232, retro_meug_415, retro_meug_994,
Microcebus murinus ENSMICG00000000450 ortholog_one2one 2 retrogenes
retro_mmur_1189, retro_mmur_1461,
Macaca mulatta ENSMMUG00000003505 ortholog_one2many 1 retrogene
retro_mmul_38,
Monodelphis domestica ENSMODG00000021088 ortholog_one2one 3 retrogenes
retro_mdom_1262, retro_mdom_769, retro_mdom_917,
Nomascus leucogenys ENSNLEG00000002513 ortholog_one2one 2 retrogenes
retro_nleu_2760, retro_nleu_294,
Oryctolagus cuniculus ENSOCUG00000029753 ortholog_one2many 5 retrogenes
retro_ocun_1008, retro_ocun_1376, retro_ocun_1567, retro_ocun_27, retro_ocun_314,
Pongo abelii ENSPPYG00000020268 ortholog_one2one 2 retrogenes
retro_pabe_806, retro_pabe_829,
Pelodiscus sinensis ENSPSIG00000013793 ortholog_one2one 1 retrogene
retro_psin_30,
Pan troglodytes ENSPTRG00000021821 ortholog_one2one 1 retrogene
retro_ptro_648,
Rattus norvegicus ENSRNOG00000003470 ortholog_one2one 1 retrogene
retro_rnor_2644,
Sarcophilus harrisii ENSSHAG00000000501 ortholog_one2one 1 retrogene
retro_shar_222,
Tarsius syrichta ENSTSYG00000009139 ortholog_one2one 1 retrogene
retro_tsyr_1522,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_507 69.23 83.23
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2. retro_cpor_508 63.28 81.29
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Download FASTA sequences of all ENSCPOG00000012962 retrocopies