RetrogeneDB ID: | retro_pabe_829 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:32262133..32262597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUNDC1 | ||
Ensembl ID: | ENSPPYG00000020268 | ||
Aliases: | None | ||
Description: | FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746] |
Percent Identity: | 74.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MATRNPPPQDYESDDDSYEVLDLTEYARRHQWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQK |
MAT.NP.PQ.Y.SDDDSY.VL..TE..RRHQW.N.VFG.S.GP.VEKYSVATQ.V.GGVTGWCAG..FQK | |
Retrocopy | MAT*NPLPQEYDSDDDSYKVL*VTENVRRHQW*NQVFGPSWGPVVEKYSVATQTVTGGVTGWCAGSVFQK |
Parental | VGK-LAATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINN-LIEEATEFIKQN |
VGK..A.....G..LL.QIASHSGYVQIDWKRVEKDVNKAKRQIKK.ANKAAP.I.N.LIE..TEFIK.N | |
Retrocopy | VGK>TATAVGSGFLLL-QIASHSGYVQIDWKRVEKDVNKAKRQIKK*ANKAAPKIYN>LIEGVTEFIK*N |
Parental | IVISSGFVGGFLLGLAS |
I.ISS.F.GGFLL..AS | |
Retrocopy | IMISSRFAGGFLLRHAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .54 RPM |
SRP007412_heart | 0 .03 RPM | 7 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .60 RPM |
SRP007412_liver | 0 .00 RPM | 4 .80 RPM |