Parental gene: | ENSCPOG00000014231 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_145:661554..682763(-) |
>ENSCPOG00000014231
ATGAATGCGATGCGGGCTGCAGAGGGTCTTTTGGCTTTGAGCCAGCAGGAAGAACTCGTGGATTTGCAAGACTACCCCTT
AAGTGCCAGTGAAGATGAGGGGGACAGTGATGGAGAGAGAAAGCATCAAAAGCTTCTGGAATCAATTGGCTCTCTTGATG
GAAAGAAGAGGTGGAAATTGGCTGAGAGATCTGAGGCTAGTTTGAAGGTGTCAGAGTTTAATGTCAGTTCTGAAGGATCA
GGAGAAAAGCTGCTCCTTTCAGACCTCCTTGAGCCTGCTAAAACTTCATCTTCATTGGCTGCTGTGAAAAAGCAACTGAG
TAGAGTTAAATCCAAGAAGGCTGTGGAACTGCCCCTTAACAAACAGGAGGTTGAAAGGATCAACAGAGAAGTAGCTTTCA
ATAAAACATCACAGACCCTCTCCAAATGGGATCCTATCGTTCTGAAGAATCGGCAAGCAGAGCAGCTGGTATTTCCCTTG
GAGAAGGAGCCGGCGAGCTTTGTTCCCATTGAACACGTGTTCGGTAGTTGGAAGGCAAGAACCCCCCTGGAGCAAGAAAT
TTTCAACATCCTGTATAAAAACAAGCAGCCAGTGACAGACCCTTTATTGACTCCCATGGAAAAAGCTTCTCTCAAGGCCA
TGAGCCTGGAAGAGGCTAAGATGCGCCGAGCGGAGCTTCAGAGGGCCCGGGCTCTGCAGTCTTACTATGAAGCCAAGGCT
CGAAGAATGTTTAAAAAGAGAGATTCCAAGTATCACAAAATTGTAAAGAAAGGAAAGGTCAAGAAAGCCCTAAAAGAGTT
TGAGCAGCTGCAGAAGGTCAATCCTGCCGCTGCATTGGAGGAACTAGAAAAAATTGAAAAGGCCAGAATGATGGAACGAA
TGAGTCTTAAGCACCAGAACAGCGGGAAATGGGCCAAGTCAAAGGCAATTATGGCCAAATATGATCTAGAGGCTCGCCAA
GCTATGCAAGAACAGTTGGCTAAGAACAAAGAACTGACACAGAAACTCCAGGTAGTCTCAGAGAGTGAAGAAGAAGAGAA
AGGTACAGAAGAGGAAGAGCTTCTTGTCCCTGATGCAGTGAATGAAATACAAATGTGTACGGATGGACCAAATCCTTGGA
TGCTCAGGAATTGTAACAGTGATGCAAAAGGTGAAATCCAGAAGGACCCTGAACAGCCACCTGAGCCCATGGTCCAGGAG
GTTTCTGAAAGTGAAGAAGAGGAAAAACCAGGAGGAGAGGAAGAAGTTCTGTTGCAGGAATTTGAGGAAAGACGATCTCT
CAGAAAAAGTTCTGAGCTCAGCAAGAATGCTGAGCCAGTGGGCAGTCAGAAAACAAAAGATTCTAGCAGCCAGGAGGTAT
TATCTGAATTGAAGGCATTGACTCAGAAACTCAACCAAAAAAACTGTCAATCCAAGAAACAAAATGTGAATTTGGTGAAG
ACTGTTCTCCAAGGCCAGAGAGAGGAATGTGCCCCAGAGGAAGAGGAACCTCTGTTGCTGCAGAGGCCAGAGAGAGTACA
GACACTGGAGGATCTAGAAGATCTGGACCATGAAGAATATTCTCAAATTAGGGAGCTTTCCAGACCTGTATTAGAAGGGG
AACGAACAGAGAGAACCACAGACAACCAGACTGATGCCTCTAAGGGGAAGAAAAAGGAGCAAATGATTGATCTTCAGAAT
CTCCTAACTACAAAATCGCCTTCTGTGAAGTCGTTGGCAGTTCCCACAGCAATAGAGGAATTGGAAGATGAAGAGGAGAA
ACACCAGAAGCAGATAATAAAAGAAGCTTTTGCTGGGGACGATGTCATCAGAGATTTTTTGAAAGAGAAGAAGGAGGCTG
TGAAGGCAAGTAAGCCAAAAGATGTGGACCTGACGCTTCCTGGCTGGGGCGAGTGGGGTGGTATAGGCCTGAAGCCCAGC
GCCAAGAAAAGACGCCGATTTCTCATTAAAGCCCCTGAAGGTCCTCCAAGAAAAGACAAGAATTTGCCAAATGTGATTAT
CAGTGAGAAGCGTAACATCCAAGCAGCAGCACATCAGGTGAGGCTT
ATGAATGCGATGCGGGCTGCAGAGGGTCTTTTGGCTTTGAGCCAGCAGGAAGAACTCGTGGATTTGCAAGACTACCCCTT
AAGTGCCAGTGAAGATGAGGGGGACAGTGATGGAGAGAGAAAGCATCAAAAGCTTCTGGAATCAATTGGCTCTCTTGATG
GAAAGAAGAGGTGGAAATTGGCTGAGAGATCTGAGGCTAGTTTGAAGGTGTCAGAGTTTAATGTCAGTTCTGAAGGATCA
GGAGAAAAGCTGCTCCTTTCAGACCTCCTTGAGCCTGCTAAAACTTCATCTTCATTGGCTGCTGTGAAAAAGCAACTGAG
TAGAGTTAAATCCAAGAAGGCTGTGGAACTGCCCCTTAACAAACAGGAGGTTGAAAGGATCAACAGAGAAGTAGCTTTCA
ATAAAACATCACAGACCCTCTCCAAATGGGATCCTATCGTTCTGAAGAATCGGCAAGCAGAGCAGCTGGTATTTCCCTTG
GAGAAGGAGCCGGCGAGCTTTGTTCCCATTGAACACGTGTTCGGTAGTTGGAAGGCAAGAACCCCCCTGGAGCAAGAAAT
TTTCAACATCCTGTATAAAAACAAGCAGCCAGTGACAGACCCTTTATTGACTCCCATGGAAAAAGCTTCTCTCAAGGCCA
TGAGCCTGGAAGAGGCTAAGATGCGCCGAGCGGAGCTTCAGAGGGCCCGGGCTCTGCAGTCTTACTATGAAGCCAAGGCT
CGAAGAATGTTTAAAAAGAGAGATTCCAAGTATCACAAAATTGTAAAGAAAGGAAAGGTCAAGAAAGCCCTAAAAGAGTT
TGAGCAGCTGCAGAAGGTCAATCCTGCCGCTGCATTGGAGGAACTAGAAAAAATTGAAAAGGCCAGAATGATGGAACGAA
TGAGTCTTAAGCACCAGAACAGCGGGAAATGGGCCAAGTCAAAGGCAATTATGGCCAAATATGATCTAGAGGCTCGCCAA
GCTATGCAAGAACAGTTGGCTAAGAACAAAGAACTGACACAGAAACTCCAGGTAGTCTCAGAGAGTGAAGAAGAAGAGAA
AGGTACAGAAGAGGAAGAGCTTCTTGTCCCTGATGCAGTGAATGAAATACAAATGTGTACGGATGGACCAAATCCTTGGA
TGCTCAGGAATTGTAACAGTGATGCAAAAGGTGAAATCCAGAAGGACCCTGAACAGCCACCTGAGCCCATGGTCCAGGAG
GTTTCTGAAAGTGAAGAAGAGGAAAAACCAGGAGGAGAGGAAGAAGTTCTGTTGCAGGAATTTGAGGAAAGACGATCTCT
CAGAAAAAGTTCTGAGCTCAGCAAGAATGCTGAGCCAGTGGGCAGTCAGAAAACAAAAGATTCTAGCAGCCAGGAGGTAT
TATCTGAATTGAAGGCATTGACTCAGAAACTCAACCAAAAAAACTGTCAATCCAAGAAACAAAATGTGAATTTGGTGAAG
ACTGTTCTCCAAGGCCAGAGAGAGGAATGTGCCCCAGAGGAAGAGGAACCTCTGTTGCTGCAGAGGCCAGAGAGAGTACA
GACACTGGAGGATCTAGAAGATCTGGACCATGAAGAATATTCTCAAATTAGGGAGCTTTCCAGACCTGTATTAGAAGGGG
AACGAACAGAGAGAACCACAGACAACCAGACTGATGCCTCTAAGGGGAAGAAAAAGGAGCAAATGATTGATCTTCAGAAT
CTCCTAACTACAAAATCGCCTTCTGTGAAGTCGTTGGCAGTTCCCACAGCAATAGAGGAATTGGAAGATGAAGAGGAGAA
ACACCAGAAGCAGATAATAAAAGAAGCTTTTGCTGGGGACGATGTCATCAGAGATTTTTTGAAAGAGAAGAAGGAGGCTG
TGAAGGCAAGTAAGCCAAAAGATGTGGACCTGACGCTTCCTGGCTGGGGCGAGTGGGGTGGTATAGGCCTGAAGCCCAGC
GCCAAGAAAAGACGCCGATTTCTCATTAAAGCCCCTGAAGGTCCTCCAAGAAAAGACAAGAATTTGCCAAATGTGATTAT
CAGTGAGAAGCGTAACATCCAAGCAGCAGCACATCAGGTGAGGCTT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 8 .66 RPM |
| SRP017611_kidney | 15 .91 RPM |
| SRP017611_brain | 14 .32 RPM |
| SRP040447_lung | 15 .84 RPM |
| SRP040447_skeletal_muscle | 11 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013671 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000002180 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000156697 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014930 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000016653 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001984 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000020700 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000063785 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015258 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000006070 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022262 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000009415 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003794 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_242 | 55.15 | 77.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1272 | 73.10 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000014231 retrocopies