RetrogeneDB ID: | retro_hsap_29 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:52602940..52605241(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000253797 | |
Aliases: | UTP14C, 2700066J21Rik, KIAA0266, UTP14B | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UTP14A | ||
Ensembl ID: | ENSG00000156697 | ||
Aliases: | UTP14A, NYCO16, SDCCAG16, dJ537K23.3 | ||
Description: | UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) [Source:HGNC Symbol;Acc:10665] |
Percent Identity: | 90.22 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTANRLAESLLALSQQEELADLPKDYLLSESEDEGDNDGERKHQKLLEAISSLDGKNRRKLAERSEASLK |
M..N..AE.L.ALS.QEEL.DLPK.Y.LSE.EDEGD.DGERKHQKLLEAI.SLDGKNRRKLAERSEASLK | |
Retrocopy | MNVNQVAENL-ALSHQEELVDLPKNYPLSENEDEGDSDGERKHQKLLEAIISLDGKNRRKLAERSEASLK |
Parental | VSEFNVSSEGSGEKLVLADLLEPVKTSSSLATVKKQLSRVKSKKTVELPLNKEEIERIHREVAFNKTAQV |
VSEF.VSSEGSGEKL.LADLLEPVKTSSSLATVKKQL.RVKSKK.VELPLNKE.IE.IHREVAF.KT.QV | |
Retrocopy | VSEFSVSSEGSGEKLGLADLLEPVKTSSSLATVKKQLNRVKSKKVVELPLNKEKIEQIHREVAFSKTSQV |
Parental | LSKWDPVVLKNRQAEQLVFPLEKEEPAIAPIEHVLSGWKARTPLEQEIFNLLHKNKQPVTDPLLTPVEKA |
LSKWDP..LKN.QAEQLVFPL.KE.PAIAPIEH.LSGWKARTPLEQEIFNLLHKNKQPVTDPLLTP.EKA | |
Retrocopy | LSKWDPIILKNQQAEQLVFPLGKEQPAIAPIEHALSGWKARTPLEQEIFNLLHKNKQPVTDPLLTPMEKA |
Parental | SLRAMSLEEAKMRRAELQRARALQSYYEAKARREKKIKSKKYHKVVKKGKAKKALKEFEQLRKVNPAAAL |
SL.AMSLEEAKM.RAELQRARALQSYYEAKAR.EKKIKSKKYHKVVKKGKAKKALKEFEQL.KVNP..AL | |
Retrocopy | SLQAMSLEEAKMHRAELQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEFEQLQKVNPTVAL |
Parental | EELEKIEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLSKNKELTQKLQVASESEEEEGGT |
EE.EKIE.ARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQL.KNKELTQKLQVASESEEEEGGT | |
Retrocopy | EEMEKIENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVASESEEEEGGT |
Parental | EDVEELLVPDVVNEVQMNADGPNPWMLRSCTSDTKEAATQEDPEQLPELEAHGVSESEGEERPVAEEEIL |
E.VEELLVP.V.NEVQMN.DGPNPWM.RSCTSDTKEAATQEDPEQ.PEL.AH.VS.SE.EERPVAEEEIL | |
Retrocopy | E-VEELLVPHVANEVQMNVDGPNPWMFRSCTSDTKEAATQEDPEQVPELAAHEVSASEAEERPVAEEEIL |
Parental | LREFEERRSLRKRSELSQDAEPAGSQETKDSGSQEVLSELRVLSQKLKENHQSRKQKASSEGTIPQVQRE |
LREFEER.SLRKRSEL.QDAEPA.SQETKDS.SQEVLSELR.LSQKLKE.HQSRKQKASSEGT.PQVQRE | |
Retrocopy | LREFEERQSLRKRSELNQDAEPASSQETKDSSSQEVLSELRALSQKLKEKHQSRKQKASSEGTVPQVQRE |
Parental | EPAPEEEEPLLLQRPERVQTLEELEELGKEECFQNKELPRPVLEGQQSERTPNNRPDAPKEKKKKEQMID |
EPAPEE.EPLLLQR.ERVQTLEELEELGKE.CFQNKELPRPVLEGQQSERTPNNRPDAPKEKK.KEQ.I. | |
Retrocopy | EPAPEEAEPLLLQRSERVQTLEELEELGKEDCFQNKELPRPVLEGQQSERTPNNRPDAPKEKKEKEQLIN |
Parental | LQNLLTTQSPSVKSLAVPT-IEELEDEEERNHRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLP |
LQN.LTTQSPSV.SLAVPT.IEELEDEEER..RQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLP | |
Retrocopy | LQNFLTTQSPSVRSLAVPTIIEELEDEEERDQRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLP |
Parental | GWGEWGGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHHWQFERTI |
GWGEWGGVGLKPSAKKRR.FLIKAPEGPPRKDKNLPNVII.EKRNIHAAAHQV.VLPYPFTHH.QFERTI | |
Retrocopy | GWGEWGGVGLKPSAKKRRQFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVQVLPYPFTHHRQFERTI |
Parental | QTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPIKAEDVGYRSSSRSDLSVIQRNPKRITTRHKKQLK |
QTPIGSTWNTQRAFQKLTTPKVVTKPGHII.PIKAEDVGY.SSSRSDL.VIQRNPKRITTRH.K..K | |
Retrocopy | QTPIGSTWNTQRAFQKLTTPKVVTKPGHIIKPIKAEDVGYQSSSRSDLPVIQRNPKRITTRHNKEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 11 .67 RPM | 13 .26 RPM |
bodymap2_adrenal | 11 .42 RPM | 20 .24 RPM |
bodymap2_brain | 10 .50 RPM | 9 .63 RPM |
bodymap2_breast | 15 .62 RPM | 11 .73 RPM |
bodymap2_colon | 14 .37 RPM | 26 .01 RPM |
bodymap2_heart | 10 .30 RPM | 5 .63 RPM |
bodymap2_kidney | 18 .94 RPM | 10 .73 RPM |
bodymap2_liver | 8 .79 RPM | 7 .61 RPM |
bodymap2_lung | 7 .33 RPM | 7 .28 RPM |
bodymap2_lymph_node | 12 .66 RPM | 11 .71 RPM |
bodymap2_ovary | 24 .12 RPM | 25 .89 RPM |
bodymap2_prostate | 13 .48 RPM | 24 .53 RPM |
bodymap2_skeletal_muscle | 5 .93 RPM | 17 .99 RPM |
bodymap2_testis | 13 .22 RPM | 12 .95 RPM |
bodymap2_thyroid | 25 .61 RPM | 21 .03 RPM |
bodymap2_white_blood_cells | 21 .38 RPM | 20 .20 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
AA824593 | 52603289 | 52603793 | 99.7 | 502 | 2 | 500 |
AL711178 | 52604164 | 52604695 | 99.5 | 528 | 3 | 525 |
AU141779 | 52603788 | 52604518 | 99.2 | 728 | 1 | 725 |
AW291601 | 52603347 | 52603624 | 100 | 277 | 0 | 277 |
AW501110 | 52603062 | 52603483 | 100 | 421 | 0 | 421 |
BE762879 | 52604099 | 52604422 | 99.7 | 322 | 1 | 321 |
BF431420 | 52603318 | 52603778 | 99.6 | 457 | 2 | 454 |
BF756763 | 52603118 | 52603529 | 98.3 | 407 | 2 | 400 |
BF805361 | 52603952 | 52604393 | 98.5 | 439 | 1 | 434 |
BG471872 | 52604107 | 52604580 | 98.4 | 472 | 1 | 468 |
BM144786 | 52603273 | 52603666 | 98.5 | 379 | 5 | 371 |
BM993493 | 52603020 | 52603666 | 100 | 645 | 0 | 645 |
BP193244 | 52603108 | 52603689 | 96.8 | 565 | 15 | 547 |
BP256572 | 52603688 | 52604271 | 99.9 | 581 | 1 | 579 |
BP380599 | 52603291 | 52603919 | 97.9 | 604 | 8 | 594 |
CN387730 | 52603167 | 52603869 | 99.6 | 702 | 0 | 701 |
CN387731 | 52602963 | 52603367 | 99.8 | 403 | 1 | 402 |
CV570026 | 52602864 | 52603462 | 99.7 | 596 | 2 | 594 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_824 |
Gorilla gorilla | retro_ggor_163 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013671 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014231 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002180 | 1 retrocopy | |
Homo sapiens | ENSG00000156697 | 1 retrocopy |
retro_hsap_29 ,
|
Gorilla gorilla | ENSGGOG00000014930 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016653 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001984 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020700 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063785 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006070 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022262 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009415 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003794 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 8 .13 RPM |
CEU_NA11843 | 5 .00 RPM |
CEU_NA11930 | 13 .82 RPM |
CEU_NA12004 | 6 .72 RPM |
CEU_NA12400 | 6 .38 RPM |
CEU_NA12751 | 16 .27 RPM |
CEU_NA12760 | 10 .06 RPM |
CEU_NA12827 | 8 .21 RPM |
CEU_NA12872 | 14 .45 RPM |
CEU_NA12873 | 11 .90 RPM |
FIN_HG00183 | 8 .70 RPM |
FIN_HG00277 | 11 .39 RPM |
FIN_HG00315 | 10 .76 RPM |
FIN_HG00321 | 11 .82 RPM |
FIN_HG00328 | 9 .94 RPM |
FIN_HG00338 | 9 .03 RPM |
FIN_HG00349 | 8 .91 RPM |
FIN_HG00375 | 12 .76 RPM |
FIN_HG00377 | 9 .53 RPM |
FIN_HG00378 | 16 .94 RPM |
GBR_HG00099 | 15 .90 RPM |
GBR_HG00111 | 6 .47 RPM |
GBR_HG00114 | 7 .73 RPM |
GBR_HG00119 | 11 .76 RPM |
GBR_HG00131 | 17 .45 RPM |
GBR_HG00133 | 10 .85 RPM |
GBR_HG00134 | 14 .83 RPM |
GBR_HG00137 | 5 .86 RPM |
GBR_HG00142 | 14 .39 RPM |
GBR_HG00143 | 11 .65 RPM |
TSI_NA20512 | 4 .78 RPM |
TSI_NA20513 | 17 .80 RPM |
TSI_NA20518 | 12 .52 RPM |
TSI_NA20532 | 12 .01 RPM |
TSI_NA20538 | 12 .35 RPM |
TSI_NA20756 | 10 .65 RPM |
TSI_NA20765 | 17 .20 RPM |
TSI_NA20771 | 13 .96 RPM |
TSI_NA20786 | 11 .64 RPM |
TSI_NA20798 | 12 .91 RPM |
YRI_NA18870 | 12 .66 RPM |
YRI_NA18907 | 13 .66 RPM |
YRI_NA18916 | 12 .48 RPM |
YRI_NA19093 | 8 .67 RPM |
YRI_NA19099 | 12 .06 RPM |
YRI_NA19114 | 15 .02 RPM |
YRI_NA19118 | 11 .37 RPM |
YRI_NA19213 | 18 .56 RPM |
YRI_NA19214 | 16 .18 RPM |
YRI_NA19223 | 16 .47 RPM |