RetrogeneDB ID: | retro_mmus_261 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:78664386..78666729(+) | ||
Located in intron of: | ENSMUSG00000032883 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000079470 | |
Aliases: | Utp14b, 4932411L21Rik, jsd | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Utp14a | ||
Ensembl ID: | ENSMUSG00000063785 | ||
Aliases: | Utp14a, 2700066J21Rik, JsdX, NY-CO-16, SDCCAG16, T25628, mKIAA0266 | ||
Description: | UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1919804] |
Percent Identity: | 67.37 % |
Parental protein coverage: | 61.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNSIKATKGLLALSQQDDLMDLTSNYPLSASEDEGDSDGERKHQKLLEAIGSLSGKNRWKLPERSEAGLK |
MN.......LLALSQQ..L.DL..NYPLS.SEDEGDSDGE.K.QKLLEA..SL..KN.WKL.ERSEA... | |
Retrocopy | MNMARNVTDLLALSQQEELVDLPENYPLSTSEDEGDSDGEGKRQKLLEAVSSLGRKNKWKLAERSEASRM |
Parental | VSEFNVSSEGSGEKLALSDLLGPLKPSSSLAAVKKQLSRVKSKKTLELPLHKREVEQIHREVAFSKTSQT |
VSEFNV.SEGSGEKL.LSDLLG.....SS.AAVKKQL.RVKSK.TL..PL.K.E.....RE.AFSKTSQ. | |
Retrocopy | VSEFNVTSEGSGEKLVLSDLLGSATALSSVAAVKKQLHRVKSK-TLTPPLNKEEADRALREAAFSKTSQM |
Parental | LSKWDSVVQKNREAEQLVFPLEKEPSSFAPMEHVFREWKARTPLEQEVFNLLHKNKQPVTDPLLTPVEKA |
LS.WD.VV.KNR.AEQL.FP.EKEP...AP.EHVF..WK.RTPLE.EVFNLLHKNKQPVTDPLLTPVE.A | |
Retrocopy | LSRWDPVVLKNRQAEQLIFPMEKEPPAVAPIEHVFTDWKVRTPLEREVFNLLHKNKQPVTDPLLTPVETA |
Parental | SLKAMSLEEAKIRRAELQRARALQSYYEARARRMKKIKSKKYHKIVKKGKAKKALKDFEQLRKVDPDAAL |
S..AMSLEEAKIRRAELQR.RALQSYYEARARR.K.IKSKKYH...KKGKAKKALK.FE.L.K..P.AAL | |
Retrocopy | SIRAMSLEEAKIRRAELQRTRALQSYYEARARREKRIKSKKYHRALKKGKAKKALKEFEELWKDCPNAAL |
Parental | EELEKMEKARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKELTQKLQVVSESEEEGGAD |
.ELEKMEKARM.ERMSLKHQ.SGKWAKSKAIMAKYD.EAR.AMQEQLAKN.ELTQKLQVVSESEEE.G.. | |
Retrocopy | QELEKMEKARMTERMSLKHQGSGKWAKSKAIMAKYDPEARKAMQEQLAKNRELTQKLQVVSESEEEDGCT |
Parental | EEEAL-VPDIVNEVQKTADGPNPWMLRSCSRDAKENEIQADSEQLPESAAHEFPENEENDKPVAEEDELL |
EE....V.......Q..ADG.NPWML.SC...AK..EI..D.EQ.PE..AH...E.E....PVAEE...L | |
Retrocopy | EEGIVSVSHGMDDLQMNADGVNPWMLSSCNSNAKRGEIKTDPEQMPEFVAHVSSESEGDERPVAEE-LVL |
Parental | KELEKRRSLRKRSELNQAAEPLGNQETKDSTSQEVLSELRALSKKLSKENHLSKK |
KE....RS...R...N..A.....QET.DS.SQEVL..L...S.........S.. | |
Retrocopy | KE----RSFQERVDPNN-AKLMDGQETEDSDSQEVLQKLNKESHQSDNQKVSSEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 6 .35 RPM | 11 .92 RPM |
SRP007412_cerebellum | 4 .39 RPM | 13 .42 RPM |
SRP007412_heart | 0 .81 RPM | 10 .27 RPM |
SRP007412_kidney | 1 .69 RPM | 9 .32 RPM |
SRP007412_liver | 4 .72 RPM | 8 .77 RPM |
SRP007412_testis | 13 .49 RPM | 4 .85 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BG242485 | 78665182 | 78665899 | 99.1 | 704 | 3 | 692 |
CA548273 | 78665621 | 78666206 | 100 | 585 | 0 | 585 |
CA551361 | 78665621 | 78666208 | 100 | 586 | 0 | 585 |
CA552569 | 78665621 | 78666063 | 100 | 442 | 0 | 442 |
CA552850 | 78665621 | 78666156 | 99.9 | 534 | 1 | 533 |
CA553537 | 78665621 | 78666188 | 100 | 567 | 0 | 567 |
CB520027 | 78665980 | 78666281 | 100 | 301 | 0 | 301 |
CF153919 | 78665621 | 78666120 | 99.8 | 498 | 1 | 497 |
CF157317 | 78665621 | 78666129 | 99.9 | 507 | 1 | 506 |
CF157786 | 78665621 | 78666077 | 100 | 456 | 0 | 456 |
CF158074 | 78665621 | 78666119 | 99.8 | 497 | 1 | 496 |
CF158229 | 78665621 | 78666123 | 100 | 502 | 0 | 502 |
CF158765 | 78665621 | 78666079 | 99.8 | 457 | 1 | 456 |
CF159941 | 78665621 | 78666066 | 99.8 | 444 | 1 | 443 |
CF161450 | 78665621 | 78666118 | 100 | 497 | 0 | 497 |
CF174413 | 78664357 | 78665009 | 99.9 | 651 | 1 | 650 |
CK335997 | 78664559 | 78664876 | 99.7 | 316 | 1 | 315 |
DT909247 | 78665611 | 78666217 | 97.9 | 603 | 3 | 595 |
DT909409 | 78665611 | 78666228 | 99.4 | 616 | 1 | 614 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013671 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014231 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002180 | 1 retrocopy | |
Homo sapiens | ENSG00000156697 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014930 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016653 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001984 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020700 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063785 | 1 retrocopy |
retro_mmus_261 ,
|
Nomascus leucogenys | ENSNLEG00000015258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006070 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022262 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009415 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003794 | 1 retrocopy |