Parental gene:

CHCHD3, ENSDNOG00000004942

Aliases:None
Description:coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:21906]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1545:40625..216762(-)


>ENSDNOG00000004942
ATGGGCGGTGCAGGCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCAGAAAATGTGATTGATCGAATGAAGGAGTCCTCTCCATCTGGTTCGAAGCCTCAGCGATATTCTAGTGGTTATG
GTGCCTCAGTTTCTGAAGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTAGCATTGGAACAAGCCAAGAAAGAATCTGAA
AATAAAAAACGACTGAAGCAAAGCAAAGAACTGGACCAAGAGAGGGCTGCTGCCAGTGAGCAGTTAACCAGAGCTATTCT
ACGAGAGAGAATATCAAGTGAGGAGGAACGCTCTAAGGCAAAGCATCTGGCCAAGCAGCTGGAAGAGAGAGACCGAGTGA
TAAAGAAGCAGGAAGCGTTCTACAAAGAGCAGCTGGCTAGACTGGANNNNNNNAGTTCAGAATTCTACAAAGTTACCACC
GAGCAATATCAGAAAGCTGCTGAAGAAGTGGAAGCAAAGTTCAAGCGGTATGAGTTCCATCCAGTCTGTGCCGATCTGCA
GGCCAAAATTCTCCAGTGTTACCGCCAGAACACCCAGCAGACCCTCAGCTGCTCTGCTCTGGCCAGCCAGTACATGCACT
GTGTCAATCATGCTAAACAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 48 .23 RPM
SRP012922_cerebellum 22 .82 RPM
SRP012922_heart 69 .61 RPM
SRP012922_kidney 32 .03 RPM
SRP012922_liver 10 .68 RPM
SRP012922_lung 20 .77 RPM
SRP012922_quadricep_muscle 75 .29 RPM
SRP012922_spleen 33 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001312 ortholog_one2one 1 retrogene
retro_cfam_374,
Homo sapiens ENSG00000106554 ortholog_one2one 3 retrogenes
retro_hsap_358, retro_hsap_3759, retro_hsap_542,
Macaca mulatta ENSMMUG00000001671 ortholog_one2many 1 retrogene
retro_mmul_14,
Mus musculus ENSMUSG00000053768 ortholog_one2one 1 retrogene
retro_mmus_3452,
Nomascus leucogenys ENSNLEG00000012967 ortholog_one2one 3 retrogenes
retro_nleu_168, retro_nleu_716, retro_nleu_904,
Oryctolagus cuniculus ENSOCUG00000014032 ortholog_one2one 1 retrogene
retro_ocun_801,
Pongo abelii ENSPPYG00000025827 ortholog_one2one 5 retrogenes
retro_pabe_2492, retro_pabe_3161, retro_pabe_345, retro_pabe_411, retro_pabe_501,
Pan troglodytes ENSPTRG00000019711 ortholog_one2one 4 retrogenes
retro_ptro_2550, retro_ptro_282, retro_ptro_407, retro_ptro_701,
Rattus norvegicus ENSRNOG00000013211 ortholog_one2one 1 retrogene
retro_rnor_2874,
Sorex araneus ENSSARG00000012111 ortholog_one2one 1 retrogene
retro_sara_592,
Ictidomys tridecemlineatus ENSSTOG00000022282 ortholog_one2one 1 retrogene
retro_itri_1301,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2559 96.36 100.00
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Download FASTA sequences of all ENSDNOG00000004942 retrocopies