Parental gene: | CHCHD3, ENSPTRG00000019711 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:134279026..134577314(-) |
>ENSPTRG00000019711
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCTGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATCTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGATCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGATATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
ATGGGTGGGACCACCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCG
GCTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGTGCTTATG
GTGCCTCAGTTTCTGATGAAGAATTGAAAAGAAGAGTAGCTGAGGAGCTGGCATTGGAGCAAGCCAAGAAAGAATCTGAA
GATCAGAAACGACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCT
TCGGGAGAGGATATCTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTGGCTAGGCAGCTGGAAGAGAAAGATCGAGTGC
TAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGGAGCTCAGAGTTCTACAGAGTCACCACT
GAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAAGCGATATGAGTCTCATCCAGTCTGTGCTGATCTGCA
GGCCAAAATTCTTCAGTGTTACCGTGAGAACACCCACCAGACCCTCAAATGCTCCGCTCTGGCCACCCAGTATATGCACT
GTGTCAATCATGCCAAACAGAGCATGCTTGAGAAGGGAGGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 16 .14 RPM |
| SRP007412_cerebellum | 13 .19 RPM |
| SRP007412_heart | 62 .43 RPM |
| SRP007412_kidney | 38 .42 RPM |
| SRP007412_liver | 25 .14 RPM |
| SRP007412_testis | 13 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001312 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000004942 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106554 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000001671 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000053768 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012967 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014032 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025827 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013211 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000012111 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022282 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_282 | 96.05 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_407 | 79.39 | 98.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_701 | 53.17 | 54.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2550 | 61.72 | 55.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019711 retrocopies