Parental gene:

SNRPB, ENSDNOG00000007896

Aliases:None
Description:small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_7938:40862..49011(+)


>ENSDNOG00000007896
ATGACTGTTAGCAAGAGCAGCAAGATGCTGCAGCACATTGACTACAGGATGAGGTGCATCCTGCAAGATGGCCGTATCTT
CATTGGCACCTTCAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGTGACTGCGATGAGTTCAGGAAGATCAAGCCAA
AGAACTCAAAACAAGCAGAAAGGGAAGAGAAGCGTGTCCTTGGACTGGTGCTGCTGCGAGGGGAAAACCTGGTCTCAATG
ACAGTAGAGGGACCTCCTCCCAAAGATACTGGCATTGCCCGAGTGCCACTTGCTGGAGCTGCTGGAGGCCCAGGGATTGG
TAGAGCAGCTGGCAGAGGTATTCCAGCTGGTGTTCCCATGCCCCAGGCTCCTGCAGGACTTAGGCCAGTCCGTGGGGTTG
GTGGGCCATCCCAACAGGTAATGACCCCACAGGGAAGAGGCACTGTTGCAGCCGCCGCTGCTGCTGCCACAGCCAGTATT
GCAGGAGCCCCAACCCAGTATCCACCTGGTCGTGGGGGTCCTCCCCCACCTATGGGCCGAGGAGCACCCCCTCCAGGCAT
GATGGGCCCACCTCCTGGAATGAGGCCTCCCATGGGTCCCCCAATGGGGATTCCCCCTGGACGAGGAACTCCAATGGGCA
TGCCCCCTCCAGGGATGCGGCCCTCTCCCCCAGGCATAACAGCCTTCTTTGACCCTTGGCCACAGAGTATGGAAGTAGCT
CCACAGAGGCGTGGGCCCGATTCCCCAGGGCCAAGTTACCACAGACCTGTTTGTTTGTTATGCTGTTGTTCGTGGAGTCT
CACCGGATTGTCTGGTTTCACAGGGCCCCCTCCCCCGGGAATGCGCCCACCAAGGCCCTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 62 .62 RPM
SRP012922_cerebellum 98 .29 RPM
SRP012922_heart 36 .20 RPM
SRP012922_kidney 78 .03 RPM
SRP012922_liver 29 .72 RPM
SRP012922_lung 74 .22 RPM
SRP012922_quadricep_muscle 41 .19 RPM
SRP012922_spleen 70 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011353 ortholog_one2one 1 retrogene
retro_amel_1403,
Canis familiaris ENSCAFG00000006693 ortholog_one2many 3 retrogenes
retro_cfam_1268, retro_cfam_1773, retro_cfam_461,
Callithrix jacchus ENSCJAG00000020971 ortholog_one2many 2 retrogenes
retro_cjac_172, retro_cjac_1739,
Erinaceus europaeus ENSEEUG00000015568 ortholog_one2one 3 retrogenes
retro_eeur_312, retro_eeur_434, retro_eeur_6,
Felis catus ENSFCAG00000014447 ortholog_one2one 2 retrogenes
retro_fcat_1788, retro_fcat_1960,
Microcebus murinus ENSMICG00000016519 ortholog_one2one 4 retrogenes
retro_mmur_1012, retro_mmur_1478, retro_mmur_546, retro_mmur_861,
Myotis lucifugus ENSMLUG00000016951 ortholog_one2one 1 retrogene
retro_mluc_1725,
Mustela putorius furo ENSMPUG00000009283 ortholog_one2one 1 retrogene
retro_mputfur_1153,
Nomascus leucogenys ENSNLEG00000009206 ortholog_one2one 1 retrogene
retro_nleu_761,
Otolemur garnettii ENSOGAG00000016149 ortholog_one2one 4 retrogenes
retro_ogar_2197, retro_ogar_2841, retro_ogar_2918, retro_ogar_3236,
Ochotona princeps ENSOPRG00000007459 ortholog_one2one 2 retrogenes
retro_opri_697, retro_opri_72,
Pongo abelii ENSPPYG00000010841 ortholog_one2one 1 retrogene
retro_pabe_2265,
Pteropus vampyrus ENSPVAG00000017013 ortholog_one2one 1 retrogene
retro_pvam_289,
Tupaia belangeri ENSTBEG00000010040 ortholog_one2one 3 retrogenes
retro_tbel_1117, retro_tbel_1171, retro_tbel_2839,
Tarsius syrichta ENSTSYG00000014498 ortholog_one2one 2 retrogenes
retro_tsyr_45, retro_tsyr_719,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2060 93.12 74.83
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_dnov_2471 74.32 50.70
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000007896 retrocopies