Parental gene:

RAN, ENSDNOG00000009230

Aliases:None
Description:RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_64206:396..2415(+)


>ENSDNOG00000009230
CTTGTATTGGTTGGCGATGGTGGTACTGGGAAAACTACTTTCGTAAAACGTCATTTGACCGGTGAATTTGAGAAGAAGTA
TGTAGCTACCTTGGGTGTTGAGGTCCATCCCCTTGTGTTCCATACCAACAGAGGACCTATCAAGTTCAACGTGTGGGACA
CGGCTGGCCAGGAGAAGTTCGGTGGACTGCGAGATGGCTATTATATTCAAGCCCAATGCGCCATTATAATGTTTGATGTA
ACATCGAGAGTTACTTACAAGAATGTGCCTAATTGGCATAGAGATCTGGTACGAGTGTGTGAAAACATCCCCATCGTGTT
GTGTGGCAACAAAGTGGATATTAAGGACAGGAAAGTTAAGGCAAAATCTATCGTCTTCCACCGAAAGAAGAATCTTCAGT
ACTATGACATTTCTGCCAAAAGTAACTACAACTTTGAAAAGCCCTTCCTTTGGCTTGCTAGAAAACTGATTGGAGACCCT
AACTTGGAGTTTGTGGCCATGCCTGCCCTTGCCCCACCAGAGGTTGTCATGGACCCAGCTTTGGCAGCACAGTATGAACA
TGACTTAGAGGTTGCTCAGACAACTGCTCTGCCGGATGAGGATGACGACCTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 90 .43 RPM
SRP012922_cerebellum 48 .66 RPM
SRP012922_heart 28 .31 RPM
SRP012922_kidney 54 .49 RPM
SRP012922_liver 37 .77 RPM
SRP012922_lung 43 .68 RPM
SRP012922_quadricep_muscle 52 .10 RPM
SRP012922_spleen 88 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004222 ortholog_one2one 4 retrogenes
retro_amel_1119, retro_amel_1625, retro_amel_1631, retro_amel_700,
Canis familiaris ENSCAFG00000006670 ortholog_one2one 6 retrogenes
retro_cfam_1406, retro_cfam_1584, retro_cfam_1604, retro_cfam_2058, retro_cfam_426, retro_cfam_899,
Callithrix jacchus ENSCJAG00000003927 possible_ortholog 8 retrogenes
retro_cjac_1558, retro_cjac_1844, retro_cjac_2509, retro_cjac_2952, retro_cjac_3071, retro_cjac_3107, retro_cjac_4222, retro_cjac_492,
Equus caballus ENSECAG00000020532 ortholog_one2one 3 retrogenes
retro_ecab_195, retro_ecab_591, retro_ecab_680,
Echinops telfairi ENSETEG00000011875 ortholog_one2one 18 retrogenes
retro_etel_1051, retro_etel_1161, retro_etel_1351, retro_etel_1365, retro_etel_1584, retro_etel_1673, retro_etel_1878, retro_etel_1896, retro_etel_1915, retro_etel_2141, retro_etel_2150, retro_etel_2189, retro_etel_294, retro_etel_383, retro_etel_409, retro_etel_412, retro_etel_514, retro_etel_813,
Felis catus ENSFCAG00000027375 ortholog_one2one 6 retrogenes
retro_fcat_1097, retro_fcat_1230, retro_fcat_1297, retro_fcat_1586, retro_fcat_1904, retro_fcat_269,
Gorilla gorilla ENSGGOG00000015340 possible_ortholog 4 retrogenes
retro_ggor_2142, retro_ggor_2328, retro_ggor_2556, retro_ggor_3066,
Microcebus murinus ENSMICG00000000653 ortholog_one2one 4 retrogenes
retro_mmur_1270, retro_mmur_669, retro_mmur_791, retro_mmur_866,
Monodelphis domestica ENSMODG00000015601 ortholog_one2many 8 retrogenes
retro_mdom_100, retro_mdom_1718, retro_mdom_1990, retro_mdom_543, retro_mdom_580, retro_mdom_806, retro_mdom_814, retro_mdom_969,
Mustela putorius furo ENSMPUG00000004044 ortholog_one2one 6 retrogenes
retro_mputfur_1190, retro_mputfur_1523, retro_mputfur_228, retro_mputfur_755, retro_mputfur_784, retro_mputfur_899,
Mus musculus ENSMUSG00000029430 possible_ortholog 4 retrogenes
retro_mmus_1653, retro_mmus_182, retro_mmus_2029, retro_mmus_265,
Nomascus leucogenys ENSNLEG00000008282 possible_ortholog 4 retrogenes
retro_nleu_1565, retro_nleu_2303, retro_nleu_2353, retro_nleu_775,
Ornithorhynchus anatinus ENSOANG00000006447 ortholog_one2one 1 retrogene
retro_oana_62,
Oryctolagus cuniculus ENSOCUG00000026506 ortholog_one2many 2 retrogenes
retro_ocun_1139, retro_ocun_958,
Ochotona princeps ENSOPRG00000002629 ortholog_one2one 7 retrogenes
retro_opri_1062, retro_opri_1227, retro_opri_514, retro_opri_622, retro_opri_647, retro_opri_74, retro_opri_97,
Pteropus vampyrus ENSPVAG00000014742 ortholog_one2one 15 retrogenes
retro_pvam_1023, retro_pvam_1049, retro_pvam_1328, retro_pvam_365, retro_pvam_485, retro_pvam_597, retro_pvam_61, retro_pvam_746, retro_pvam_770, retro_pvam_863, retro_pvam_933, retro_pvam_934, retro_pvam_935, retro_pvam_948, retro_pvam_968,
Rattus norvegicus ENSRNOG00000000938 possible_ortholog 3 retrogenes
retro_rnor_138, retro_rnor_410, retro_rnor_917,
Sarcophilus harrisii ENSSHAG00000018018 ortholog_one2one 1 retrogene
retro_shar_538,
Ictidomys tridecemlineatus ENSSTOG00000003992 ortholog_one2one 3 retrogenes
retro_itri_1009, retro_itri_1442, retro_itri_723,
Vicugna pacos ENSVPAG00000008880 ortholog_one2one 3 retrogenes
retro_vpac_436, retro_vpac_589, retro_vpac_85,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_991 82.67 99.02
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2. retro_dnov_1154 79.75 75.98
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3. retro_dnov_1269 75.12 99.51
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4. retro_dnov_1485 84.62 50.98
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5. retro_dnov_1543 78.07 91.18
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6. retro_dnov_1585 81.14 85.29
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7. retro_dnov_1795 80.77 76.47
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8. retro_dnov_1924 80.19 51.47
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9. retro_dnov_1945 80.33 59.31
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10. retro_dnov_2142 79.11 75.98
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11. retro_dnov_2189 94.15 100.00
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12. retro_dnov_2613 76.98 59.31
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Download FASTA sequences of all ENSDNOG00000009230 retrocopies