Parental gene: | HSPD1, ENSDNOG00000013226 |
| Aliases: | None |
| Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_55615:3219..11399(-) |
>ENSDNOG00000013226
ATGCTTCGATTACCCGCAGTCCTTCGCCAGATGAGGCCAGTGTCCAGGGCATTGGCTCCTCATCTCATTCGGGCATATGC
CAAAGATGTGAAATTCGGTGCCGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCTGATGCTGTAGCCGTTA
CTATGGGGCCAAAGGGAAGAACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACCGTT
GCAAAATCAATTGATTTGAAGGATAAATATAAAAATATTGGAGCTAAGCTTGTTCAGGATGTTGCCAATAACACAAATGA
AGAGGCTGGGGATGGCACCACCACTGCTACTGTACTGGCACGCTCTATTGCTAAGGAAGGCTTTGAGAAGATTAGCAAAG
GTGCTAATCCAGTAGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAA
CCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATTTC
TGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACATTGAATGATGAATTAGAAATCA
TTGAAGGCATGAAGTTTGATCGGGGTTATATTTCTCCATATTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTAAGTGAAAAGAAAATTTCTAGCATTCAGTCCATTGTAACTGCTCTTGAAATTGCCAATGCTTA
CCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTTGTTTTGAATGTGTTTGGAGAAG
AGGGGTTGAATCTAAACCTTGAAGATGTTCAGGCTCACGATTTGGGAAAAGTTGGAGAGGTCATTGTGACCAAAGATGAT
GCCATGTTCTTGAAAGGAAAAGGTGATAAAGCTCAAATTGAAAAACGTATTCAAGAAATCACTGAGCAGTTAGATATCAC
AACTAGTGAATATGAAAAGGAAAAACTGAGTGAACGTTTAGCAAAACTTTCAGATGGAGTTGCTGTGCTGAAGGTTGGTG
GAACAAGTGATGTGGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCACTCAATGCTACACGAGCTGCTGTTGAAGAA
GGCATTGTTCTCGGAGGTGGCTGTGCTCTGCTTCGATGCATTCCAGCCTTGGATGCACTAACTCCAACTAACGAAGATCA
AAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCTGCAATGACCATTGCTAAGAATGCAGGTGTTGAAGGAT
CATTGATAGTTGAGAAAATTATACAGAGTTCCTCAGAAGTTGGTTATGATGCTATGCTTGGAGATTTTGTGAATATGGTA
GAAAAAGGAATCATTGATCCAACTAAGGTTGTAAGAACTGCTTTATTGGACGCTGCTGGGGTGGCATCTCTGTTAACCAC
AGCAGAAGTCGTAGTCACAGAAATTCCTAAAGAAGAGAAGGATGCTGGAATGGGCGGAATGGGTGGAATGGGTGGAATGG
GCGGTGGTATGGGAGGTGGCATGTTCTAA
ATGCTTCGATTACCCGCAGTCCTTCGCCAGATGAGGCCAGTGTCCAGGGCATTGGCTCCTCATCTCATTCGGGCATATGC
CAAAGATGTGAAATTCGGTGCCGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCTGATGCTGTAGCCGTTA
CTATGGGGCCAAAGGGAAGAACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACCGTT
GCAAAATCAATTGATTTGAAGGATAAATATAAAAATATTGGAGCTAAGCTTGTTCAGGATGTTGCCAATAACACAAATGA
AGAGGCTGGGGATGGCACCACCACTGCTACTGTACTGGCACGCTCTATTGCTAAGGAAGGCTTTGAGAAGATTAGCAAAG
GTGCTAATCCAGTAGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAA
CCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATTTC
TGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACATTGAATGATGAATTAGAAATCA
TTGAAGGCATGAAGTTTGATCGGGGTTATATTTCTCCATATTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTAAGTGAAAAGAAAATTTCTAGCATTCAGTCCATTGTAACTGCTCTTGAAATTGCCAATGCTTA
CCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTTGTTTTGAATGTGTTTGGAGAAG
AGGGGTTGAATCTAAACCTTGAAGATGTTCAGGCTCACGATTTGGGAAAAGTTGGAGAGGTCATTGTGACCAAAGATGAT
GCCATGTTCTTGAAAGGAAAAGGTGATAAAGCTCAAATTGAAAAACGTATTCAAGAAATCACTGAGCAGTTAGATATCAC
AACTAGTGAATATGAAAAGGAAAAACTGAGTGAACGTTTAGCAAAACTTTCAGATGGAGTTGCTGTGCTGAAGGTTGGTG
GAACAAGTGATGTGGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCACTCAATGCTACACGAGCTGCTGTTGAAGAA
GGCATTGTTCTCGGAGGTGGCTGTGCTCTGCTTCGATGCATTCCAGCCTTGGATGCACTAACTCCAACTAACGAAGATCA
AAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCTGCAATGACCATTGCTAAGAATGCAGGTGTTGAAGGAT
CATTGATAGTTGAGAAAATTATACAGAGTTCCTCAGAAGTTGGTTATGATGCTATGCTTGGAGATTTTGTGAATATGGTA
GAAAAAGGAATCATTGATCCAACTAAGGTTGTAAGAACTGCTTTATTGGACGCTGCTGGGGTGGCATCTCTGTTAACCAC
AGCAGAAGTCGTAGTCACAGAAATTCCTAAAGAAGAGAAGGATGCTGGAATGGGCGGAATGGGTGGAATGGGTGGAATGG
GCGGTGGTATGGGAGGTGGCATGTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 108 .32 RPM |
| SRP012922_cerebellum | 29 .56 RPM |
| SRP012922_heart | 46 .41 RPM |
| SRP012922_kidney | 138 .54 RPM |
| SRP012922_liver | 97 .22 RPM |
| SRP012922_lung | 48 .57 RPM |
| SRP012922_quadricep_muscle | 49 .68 RPM |
| SRP012922_spleen | 59 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013770 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000012586 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000010865 | ortholog_one2one | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000003990 | possible_ortholog | 6 retrogenes | |
| Echinops telfairi | ENSETEG00000009184 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000000053 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000011987 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000871 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000010489 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000012289 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007818 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000034053 | possible_ortholog | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000014525 | possible_ortholog | 9 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003417 | ortholog_one2one | 3 retrogenes | |
| Xenopus tropicalis | ENSXETG00000007509 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1990 | 99.31 | 53.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_2113 | 96.21 | 53.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_2512 | 97.58 | 53.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000013226 retrocopies