RetrogeneDB ID: | retro_dnov_1990 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_40679:6062..6929(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPD1 | ||
Ensembl ID: | ENSDNOG00000013226 | ||
Aliases: | None | ||
Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
Percent Identity: | 99.31 % |
Parental protein coverage: | 53.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRLPAVLRQMRPVSRALAPHLIRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGS |
MLRLPAVLRQMRPVSRALAPHLIRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGS | |
Retrocopy | MLRLPAVLRQMRPVSRALAPHLIRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGS |
Parental | PKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEI |
PKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEI | |
Retrocopy | PKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEI |
Parental | RRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE |
RRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE | |
Retrocopy | RRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE |
Parental | LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVTALEIANAYRKPLVIIAEDVDG |
LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIV.ALEIANA.RKPLVIIAEDVDG | |
Retrocopy | LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDG |
Parental | EALSTLVLN |
EALSTLVLN | |
Retrocopy | EALSTLVLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 83 .04 RPM | 108 .32 RPM |
SRP012922_cerebellum | 21 .86 RPM | 29 .56 RPM |
SRP012922_heart | 33 .64 RPM | 46 .41 RPM |
SRP012922_kidney | 78 .85 RPM | 138 .54 RPM |
SRP012922_liver | 62 .39 RPM | 97 .22 RPM |
SRP012922_lung | 30 .24 RPM | 48 .57 RPM |
SRP012922_quadricep_muscle | 43 .96 RPM | 49 .68 RPM |
SRP012922_spleen | 44 .41 RPM | 59 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013770 | 1 retrocopy | |
Bos taurus | ENSBTAG00000012586 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010865 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000003990 | 6 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013226 | 3 retrocopies |
retro_dnov_1990 , retro_dnov_2113, retro_dnov_2512,
|
Echinops telfairi | ENSETEG00000009184 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000000053 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011987 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000871 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000010489 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012289 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000007818 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000034053 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000014525 | 9 retrocopies | |
Tursiops truncatus | ENSTTRG00000003417 | 3 retrocopies | |
Xenopus tropicalis | ENSXETG00000007509 | 1 retrocopy |