Parental gene:

RPS20, ENSECAG00000012463

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Horse (Equus caballus)
Coordinates:9:27518974..27520449(+)


>ENSECAG00000012463
ATGGCTTTTAAAGACACCGGAAAGACACCCGTGGAGCCGGAGGTGGCGATTCACCGGATTAGAATTACTCTAACCAGCCG
CAACGTCAAATCTTTGGAGAAGGTGTGTGCTGACTTGATCAGAGGCGCGAAGGAAAAGAATCTGAAAGTGAAAGGACCAG
TTCGGATGCCCACCAAGACTCTGAGAATCACAACAAGAAAAACTCCTTGCGGTGAAGGTTCCAAGACGTGGGACCGCTTT
CAGATGAGGATCCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATCAGTATTGA
GCCAGGAGTCGAGGTTGAAGTCACCATTGCAGATGCTTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 1033 .26 RPM
SRP021940_cerebellum 272 .96 RPM
SRP021940_embryo 669 .95 RPM
SRP021940_placental_villous 345 .97 RPM
SRP021940_synovial_membrane 524 .77 RPM
SRP021940_testis 485 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000003394 ortholog_one2many 3 retrogenes
retro_etel_16, retro_etel_1814, retro_etel_2067,
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
retro_meug_100, retro_meug_1015, retro_meug_1058, retro_meug_1170, retro_meug_1313, retro_meug_1614, retro_meug_1702, retro_meug_1761, retro_meug_1777, retro_meug_1831, retro_meug_1911, retro_meug_1951, retro_meug_2065, retro_meug_2110, retro_meug_2187, retro_meug_659, retro_meug_710, retro_meug_723, retro_meug_818, retro_meug_892, retro_meug_928,
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
retro_mdom_1701, retro_mdom_1735, retro_mdom_1738, retro_mdom_1814, retro_mdom_1817, retro_mdom_1943,
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
retro_mputfur_1094, retro_mputfur_1188, retro_mputfur_1313, retro_mputfur_1366, retro_mputfur_1374, retro_mputfur_1432, retro_mputfur_238, retro_mputfur_249, retro_mputfur_320, retro_mputfur_418, retro_mputfur_424, retro_mputfur_433, retro_mputfur_620, retro_mputfur_77, retro_mputfur_819,
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
retro_nleu_1013, retro_nleu_1343, retro_nleu_1447, retro_nleu_1566, retro_nleu_1794, retro_nleu_1798, retro_nleu_1805, retro_nleu_1818, retro_nleu_2059, retro_nleu_2159, retro_nleu_2654, retro_nleu_2659, retro_nleu_2750, retro_nleu_2786, retro_nleu_2819, retro_nleu_2843, retro_nleu_3066, retro_nleu_382, retro_nleu_41,
Rattus norvegicus ENSRNOG00000008555 possible_ortholog 7 retrogenes
retro_rnor_142, retro_rnor_155, retro_rnor_192, retro_rnor_288, retro_rnor_381, retro_rnor_401, retro_rnor_58,
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
retro_shar_135, retro_shar_228, retro_shar_418, retro_shar_436, retro_shar_441, retro_shar_443, retro_shar_450, retro_shar_504, retro_shar_544, retro_shar_785,
Tursiops truncatus ENSTTRG00000016847 ortholog_one2one 9 retrogenes
retro_ttru_1206, retro_ttru_1257, retro_ttru_1850, retro_ttru_1935, retro_ttru_350, retro_ttru_422, retro_ttru_434, retro_ttru_48, retro_ttru_570,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_328 67.23 98.32
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2. retro_ecab_378 69.57 57.98
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3. retro_ecab_536 65.81 98.32
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4. retro_ecab_573 68.93 84.03
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Download FASTA sequences of all ENSECAG00000012463 retrocopies