RetrogeneDB ID: | retro_ecab_536 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 20:22240515..22240860(+) | ||
Located in intron of: | ENSECAG00000012429 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSECAG00000012463 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 65.81 % |
Parental protein coverage: | 98.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGE |
F.DT..TPVEPE...H.IRITLTS..VKSL.KV.AD.IRG...K.L..K..V.MPT.T......KTPC.E | |
Retrocopy | FRDTRETPVEPEGESHQIRITLTSCKVKSLGKVHADWIRGVR-KSLRGKRSVQMPTTTQN-HDKKTPCDE |
Parental | GSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
GSKTWD.F.MRIHKRLID.H.PS.IVKQITS.SIEPGV..E.T..DA | |
Retrocopy | GSKTWDGF*MRIHKRLIDFHGPSGIVKQITSTSIEPGVKAEATTVDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 1033 .26 RPM |
SRP021940_cerebellum | 0 .00 RPM | 272 .96 RPM |
SRP021940_embryo | 0 .03 RPM | 669 .95 RPM |
SRP021940_placental_villous | 0 .05 RPM | 345 .97 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 524 .77 RPM |
SRP021940_testis | 0 .00 RPM | 485 .84 RPM |