RetrogeneDB ID:

retro_ttru_350

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_196:82301..82615(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS20
Ensembl ID:ENSTTRG00000016847
Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]


Retrocopy-Parental alignment summary:






>retro_ttru_350
GAACCAGAGGTGGAGATTCACTGACTTAGAATTACTCTAAGCAGCTACAGCGTAATGTCTTCGGAGAAGGTATGTGCTGA
CTTGATCAGAGGCGCAAAGGAAAAGACTCTCAAGGGGAAAGGACGGATGCCCACCAAGACTGTGAGAATAACTACAAGGA
AAATTCCTGTGGTGAAGGCTCTAGGACTTGGGATCATTTTTCAGGTGAGGATCCACAGCGACTCAGTGACACGCACAGTC
CTTCTGCGATTGTTAATAAGATTACTTCCATCAGTACTGAGCCAGGAGTCGAGGTTGAAGTCACCATGGCAGAT

ORF - retro_ttru_350 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.55 %
Parental protein coverage: 89.92 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP-CGEGSKTWDRF
EPEV.IH..RITL.S..V.S.EKVCADLIRGAKEK.LK.KG..RMPTKT.RITTRK.P.CGEGS.TWD.F
RetrocopyEPEVEIH*LRITLSSYSVMSSEKVCADLIRGAKEKTLKGKG--RMPTKTVRITTRKIP<CGEGSRTWDHF
Parental-QMRIH-KRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD
.Q.RIH..RL.D.HSPS.IV..ITSIS.EPGVEVEVT.AD
Retrocopy>QVRIH<QRLSDTHSPSAIVNKITSISTEPGVEVEVTMAD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_350 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_350 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 94 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000124634 retrocopies
Echinops telfairi ENSETEG000000033943 retrocopies
Macropus eugenii ENSMEUG0000001417121 retrocopies
Monodelphis domestica ENSMODG000000091146 retrocopies
Mustela putorius furoENSMPUG0000001045215 retrocopies
Nomascus leucogenys ENSNLEG0000000121419 retrocopies
Rattus norvegicus ENSRNOG000000085557 retrocopies
Sarcophilus harrisii ENSSHAG0000001120010 retrocopies
Tursiops truncatus ENSTTRG00000016847 9 retrocopies



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