Parental gene:

RPS20, ENSMODG00000009114

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Opossum (Monodelphis domestica)
Coordinates:3:184034444..184038464(+)


>ENSMODG00000009114
ATGGCATTCAAAGACACCGGCAAGGCACCTGTGGAGCCCGAAGTGGCCATTCACCGGATTCGAATCACCCTCACCAGCCG
CAACGTGAAATCCCTGGAGAAGGTATGTGCTGACCTTATTAGAGGGGCCAAAGAAAAGAACTTGAAAGTGAAAGGACCTG
TTCGAATGCCCACTAAGACACTTCGAATCACAACTAGAAAAACTCCTTGTGGTGAAGGTTCAAAGACATGGGATCGTTTC
CAGATGAGAATTCATAAACGCCTCATTGATTTGCACAGCCCATCTGAAATTGTTAAACAGATTACTTCTATCAGCATTGA
ACCAGGTGTAGAAGTTGAAGTCACCATTGCAGATGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006087 ortholog_one2one 17 retrogenes
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2many 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2many 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Equus caballus ENSECAG00000012463 ortholog_one2one 4 retrogenes
Echinops telfairi ENSETEG00000003394 ortholog_one2many 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2many 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Myotis lucifugus ENSMLUG00000029059 ortholog_one2many 2 retrogenes
Macaca mulatta ENSMMUG00000021314 ortholog_one2many 1 retrogene
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2many 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Pteropus vampyrus ENSPVAG00000016402 ortholog_one2one 8 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes
Tursiops truncatus ENSTTRG00000016847 ortholog_one2one 9 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1701 73.55 99.16
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2. retro_mdom_1735 70.80 94.12
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3. retro_mdom_1738 57.50 98.32
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4. retro_mdom_1814 78.08 61.34
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5. retro_mdom_1817 91.26 85.71
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6. retro_mdom_1943 70.34 98.32
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Download FASTA sequences of all ENSMODG00000009114 retrocopies