Parental gene:

RDH12, ENSECAG00000015001

Aliases:None
Description:retinol dehydrogenase 12 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:19977]
Organism:Horse (Equus caballus)
Coordinates:24:13984835..13993686(+)


>ENSECAG00000015001
ATGCTGGCTATCTTGGGACTGCTCACCTCCGTCTTTTCTTTGCTGTATGTGACAGCTCCATCCATCAGGAAGTTCTTTGC
TGGTGGGGTTTGCAGAACAACTGTGCAGGTTCCCGGGAAGGTAGTGGTGATCACCGGCGCCAACACGGGCATCGGCAAGG
AGACAGCCAGAGAGCTCGCTCGCAGAGGAGCCCGAGTATACATTGCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCC
AGTGAAATTCGAGCTGATACAAAGAACTCCCAGGTGCTGGTGCGGAAACTGGACCTATCCGATACCAGATCCATCCGAGC
CTTTGCTGAGGGCTTTCTGGCAGAGGAAAAGCAGCTCCATATTCTGATCAACAATGCAGGAGTGATGATGTTTTCACATT
CCAAAACAACTGATGGCTTTGAAATCAACCTGGGGGTCAACCACCTGGGCCACTTCCTTCTCACCTACTTGCTCCTGGAG
CGGCTGAAGGAGTCTGCTCCTGCACGGGTGGTGAACTTGTCATCAGTGATCCACCACCTTGGCAAGATTCACTTCCACAA
CTTCCGCGGTGAGGAGCCCTACAGATGGGGTTTTGCTTATTGCCACAGCAAACTGGCCAATTTGCTTTTCACTCGCGAGC
TGGCCAAGAGGATCCAAGGCACGGGGGTCACCACCTATGCTGTGCACCCAGGCATCGTCCGCTCTGAGCTGGCCCGGCAC
TCCTTCCTATGTTGCCTATTTTGGCGGCTCTTCTCCTACTTTTTAAAATCGGTGCAGGAAGGGGCACAGACCAGCCTGCA
CTGTGCGCTGGCTGAAGGCCTGGAGCCCCTAAGCGGCAAGTACTTCAGTGACTGCAAGAGGACCTGGGTGTCTCCAAGGG
CCCGAGATAACAAAACAGCTCAGCGCTTGTGGAATGTCAGCTGTGAGCTTCTAGGAATCCAATGGGAGTAG

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 1 .07 RPM
SRP021940_embryo 0 .97 RPM
SRP021940_cerebellum 0 .62 RPM
SRP021940_testis 0 .90 RPM
SRP021940_placental_villous 1 .11 RPM
SRP021940_articular_cartilage 5 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000023146 within_species_paralog 1 retrogene
retro_ecab_338,
Loxodonta africana ENSLAFG00000022637 ortholog_one2one 1 retrogene
retro_lafr_847,
Macropus eugenii ENSMEUG00000001473 ortholog_one2one 1 retrogene
retro_meug_41,
Meleagris gallopavo ENSMGAG00000011960 ortholog_one2many 1 retrogene
retro_mgal_16,
Microcebus murinus ENSMICG00000010855 ortholog_one2one 1 retrogene
retro_mmur_432,
Ornithorhynchus anatinus ENSOANG00000015759 ortholog_one2one 1 retrogene
retro_oana_89,
Procavia capensis ENSPCAG00000009359 ortholog_one2one 1 retrogene
retro_pcap_1,
Pelodiscus sinensis ENSPSIG00000010721 ortholog_one2many 1 retrogene
retro_psin_24,
Sarcophilus harrisii ENSSHAG00000012445 ortholog_one2one 1 retrogene
retro_shar_41,
Drosophila melanogaster FBgn0033203 ortholog_many2many 1 retrogene
retro_dmel_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1059 71.21 82.91
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Download FASTA sequences of all ENSECAG00000015001 retrocopies