RetrogeneDB ID: | retro_lafr_847 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_4:84144708..84145197(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RDH12 | ||
Ensembl ID: | ENSLAFG00000022637 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.94 % |
Parental protein coverage: | 51.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | INNAGVMMCPYSKTADGFETHLGVNHLGHFLLTHLLLERLKESAPSRVVNLSSVVHHVGKIHFHDLQGEK |
INNAGV.MCPY.KTAD.FET.L.VNHLGHF.LTHL.L..LK.SAP..VVNLSSVVHH.GK.HF.DLQ.EK | |
Retrocopy | INNAGVKMCPYFKTADDFETPL*VNHLGHFFLTHLPLQGLKGSAPV*VVNLSSVVHHAGKLHFRDLQNEK |
Parental | RYSR-GFAYCHSKLANVLF-TRELAKKLQGTGVTTYAVHPGIVHSELFRHSFLLCLLWRLFSPFVKSARE |
.YS..GFA.CHSKL.NVLF...EL.KKLQGTGV..YAVHP.I..S.LF.HSFLLCLLWRLF.P..KS... | |
Retrocopy | CYSQ<GFACCHSKLENVLF>SQELSKKLQGTGVPIYAVHPDIFRSQLF*HSFLLCLLWRLFFPLIKSVQK |
Parental | GAQTSLHCALAEGLEPLSGKYFSDC |
...TSLHCALAEGLEPLS.KYF.DC | |
Retrocopy | WV*TSLHCALAEGLEPLSAKYFNDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008036 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016446 | 1 retrocopy | |
Equus caballus | ENSECAG00000015001 | 1 retrocopy | |
Felis catus | ENSFCAG00000014092 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022637 | 1 retrocopy |
retro_lafr_847 ,
|
Macropus eugenii | ENSMEUG00000001473 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000011960 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010855 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000015759 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009359 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000010721 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012445 | 1 retrocopy | |
Drosophila melanogaster | FBgn0033203 | 1 retrocopy |