RetrogeneDB ID:

retro_dmel_79

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:X:6236170..6237391(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0029866
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CG2070
Ensembl ID:FBgn0033203
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dmel_79
ATGTCGGAGGCTGCCACGCCCCCAGGATCAGTGCCAGGAACAGTATTCCCACCTGGCTTCGATCCCACTGCCGAATCGGT
GGAGAAGACTCTCTGCTTCCGGGGTTTCTGGGCCTGGGCCGTGCTGATATTCCTGATTGTTCTGGGCATATTGCTCTTCA
TGTGGCTGCTGCGCAAGTGCATCCAAGGACCGGCCTACCGGAAGGCCAATCGCATCGATGGCAAGGTGGTCATCGTCACC
GGCTGCAACACGGGCATTGGCAAGGAGACGGTCCTCGAGTTGGCCAAGCGGGGTGCCCGCGTCTACATGGCCTGTCGGGA
TCCCGGTCGGTGTGAGGCCGCACGACTGGATATCATGGATCGCAGTCGCAACCAGCAGCTCTTCAATCGCACCCTGGATC
TGGGCTCCCTGCAGTCGGTGAGAAATTTCGTGGAGCGCTTCAAGGCGGAGGAATCCCGGCTGGATATACTGATCAATAAT
GCCGGCGTTATGGCCTGTCCCAGGACCCTCACAGCCGATGGCTTTGAGCAGCAGTTCGGTGTCAATCATCTGGGACACTT
TTTGCTCACGAATCTGCTGCTGGATCGACTGAAGCACAGCTCGCCCAGTCGCATTGTGGTGGTCAGTTCGGCGGCACATC
TCTTTGGGCGAATCAACCGCGAGGATCTGATGAGCGAGAAGAACTACAGCAAGTTCTTTGGGGCGTACAGTCAGTCCAAG
CTGGCCAACATCCTGTTTACCCTCAAGCTGAGCACCATCCTTAAGGACACCGGCGTAACGGTGAACTGTTGTCATCCGGG
TGTGGTCCGCACCGAGATCAACCGCCACTTTTCCGGTCCCGGCTGGATGAAGACCGCCCTGCAGAAGGGCTCGCTGTACT
TCTTTAAGACACCCAAGGCTGGCGCCCAGACCCAGCTGAGATTGGCGCTGGATCCGCAGTTGGAGGGCTCCACTGGTGGC
TATTACTCGGACTGCATGCGCTGGCCATTGTTTCCGTGGGTCCGGAATATGCAGACCGCCGACTGGTTGTGGCGAGAGAG
CGAGAAGCTGCTGGGTCTGCCACCGCTGGAGCCACCTCCACCTGTCCAGAGCCCCACCCAGAATGGCAATGGCACTCAAA
ACGGCAATGGTAGTTCCAGTGCCAGTGCCAGTGCCAGTAGTAACAATCCCGCTTCACGGGAAATGCAATCCGTGGAAACG
GTCGTGGTCAATCGTTCGTAG

ORF - retro_dmel_79 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.97 %
Parental protein coverage: 92.62 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalIYLLRQYMQGGQFTTKTNETGRVAIVTGCNQGIGKETVLELARRGATVYMACRDMKKCENARREIIKATN
..LLR...QG..........G.V.IVTGCN.GIGKETVLELA.RGA.VYMACRD...CE.AR..I.....
RetrocopyMWLLRKCIQGPAYRKANRIDGKVVIVTGCNTGIGKETVLELAKRGARVYMACRDPGRCEAARLDIMDRSR
ParentalNQNIFARQLDLCSMKSIRNFAAGFKREQNKLHILINNAGIMDCPKMLTEDGFEMQIGVNHMGHFLLTLLL
NQ..F.R.LDL.S..S.RNF...FK.E...L.ILINNAG.M.CP..LT.DGFE.Q.GVNH.GHFLLT.LL
RetrocopyNQQLFNRTLDLGSLQSVRNFVERFKAEESRLDILINNAGVMACPRTLTADGFEQQFGVNHLGHFLLTNLL
ParentalLDVLKSSAPSRVVVLSSIAHRFGRIKRDDLNSEKSYDRKM-AYCQSKLANVLFTRELAKRLSGTGVTVNA
LD.LK.S.PSR.VV.SS.AH.FGRI.R.DL.SEK.Y.....AY.QSKLAN.LFT..L...L..TGVTVN.
RetrocopyLDRLKHSSPSRIVVVSSAAHLFGRINREDLMSEKNYSKFFGAYSQSKLANILFTLKLSTILKDTGVTVNC
ParentalLHPGVVNTELFRNTPFLGSWFGKLLIAPIIWIFIKTARNGAQTTLYAALDPSLEKVSGRYFSDCKQKHVG
.HPGVV.TE...N..F.G....K.........F.KT...GAQT.L..ALDP.LE...G.Y.SDC......
RetrocopyCHPGVVRTEI--NRHFSGPGWMKTALQKGSLYFFKTPKAGAQTQLRLALDPQLEGSTGGYYSDCMRWPLF
ParentalSAAQYDDDAQFLWAESEKWTGI
........A..LW.ESEK..G.
RetrocopyPWVRNMQTADWLWRESEKLLGL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

1 EST(s) were mapped to retro_dmel_79 retrocopy
EST ID Start End Identity Match Mis-match Score
EC086171 6236742 6237065 100 323 0 323

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_79 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000033061 retrocopy
retro_amel_114,
Ailuropoda melanoleuca ENSAMEG000000080361 retrocopy
retro_amel_673,
Canis familiaris ENSCAFG000000164461 retrocopy
retro_cfam_2068,
Equus caballus ENSECAG000000150011 retrocopy
retro_ecab_1059,
Equus caballus ENSECAG000000231461 retrocopy
retro_ecab_338,
Felis catus ENSFCAG000000140921 retrocopy
retro_fcat_1910,
Loxodonta africana ENSLAFG000000226371 retrocopy
retro_lafr_847,
Macropus eugenii ENSMEUG000000014731 retrocopy
retro_meug_41,
Meleagris gallopavo ENSMGAG000000119601 retrocopy
retro_mgal_16,
Microcebus murinus ENSMICG000000108551 retrocopy
retro_mmur_432,
Ornithorhynchus anatinus ENSOANG000000157591 retrocopy
retro_oana_89,
Ochotona princeps ENSOPRG000000159982 retrocopies
retro_opri_286, retro_opri_524,
Procavia capensis ENSPCAG000000093591 retrocopy
retro_pcap_1,
Petromyzon marinus ENSPMAG000000090951 retrocopy
retro_pmar_3,
Pongo abelii ENSPPYG000000103981 retrocopy
retro_pabe_1972,
Pelodiscus sinensis ENSPSIG000000107211 retrocopy
retro_psin_24,
Pan troglodytes ENSPTRG000000114841 retrocopy
retro_ptro_1576,
Sorex araneus ENSSARG000000036001 retrocopy
retro_sara_314,
Sarcophilus harrisii ENSSHAG000000124451 retrocopy
retro_shar_41,
Tupaia belangeri ENSTBEG000000165311 retrocopy
retro_tbel_1570,
Drosophila melanogaster FBgn0033203 1 retrocopy
retro_dmel_79 ,


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