Parental gene:

GOT2, ENSECAG00000016504

Aliases:None
Description:glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433]
Organism:Horse (Equus caballus)
Coordinates:3:10688718..10710775(-)


>ENSECAG00000016504
ATGGCCCTGCTGCACTCCGGCCGCGTCCTGTCCGGGGTCGCCTCCGCCTTCCACCCAGGCCTCGCTGCCGCGGCTTCTGC
CAGAGCCAGCTCCTGGTGGGCCCATGTGGAGATGGGGCCCCCAGATCCCATCCTGGGAGTCACAGAAGCCTATAAGAGAG
ACACCAACAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGATGATAATGGAAAACCTTACGTGCTCCCTAGCGTC
CGGAAGGCAGAGGCCCAGATTGCTGCAAAAAATTTGGACAAAGAATACCTGCCCATTGGGGGGCTGGCGGAGTTTTGTAA
GGCATCTGCAGAGCTGGCCCTGGGTGAGAACAGTGAAGCGTTGAAAAGCGGCCGGTATGTCACCGTGCAGAGCATTTCTG
GAACTGGGGCCTTAAGGATCGGAGCCAATTTTCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCACACACCCATCTTCAGGGACGCTGGCTTGCAGCTCCATGCTTATCGGTACTACGACCCCAAGACGTG
CGGCTTTGACGTCACGGGCGCCCTGGAGGACATTTCAAAAATACCACAGCAGAGCATTATTCTCCTGCACGCCTGTGCCC
ACAATCCCACAGGAGTGGACCCTCGCCCTGAGCAGTGGAAAGAAATAGCAACACTGGTGAAGAAAAACAATCTCTTTGCG
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGGGACAAGGATGCCTGGGCTGTACGCTATTTCATTGAACA
GGGCATTAATGTTTGTCTCTGCCAATCCTATGCCAAGAACATGGGCTTATACGGTGAGCGTGTGGGAGCCTTCACTATGG
TCTGCAAAGATGCTGATGAAGCCAAAAGGGTGGAGTCACAGTTGAAGATCTTGATCCGGCCCCTGTATTCCAACCCGCCT
CTCAATGGGGCCCGGATCGCCTCAACCATTCTGACCAGCCCTGATCTGCGAAAACAATGGTTGCAAGAAGTAAAAGGCAT
GGCCGACCGCATCATTAGCATGCGGACTCAGCTGGTCTCCAACCTCAAGAAGGAGGGCTCCTCCCACAGTTGGCAGCACA
TCGCCGACCAAATTGGCATGTTTTGTTTCACAGGACTGAAGCCGGAGCAGGTGGAGCGGCTGACCAAGGAGTTCTCCATC
TACATGACGAAGGACGGCCGCATCTCTGTGGCAGGGGTCACCTCTGGCAACGTGGGCTACCTTGCTCATGCCATTCACCA
GGTCACCAAGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 51 .12 RPM
SRP021940_cerebellum 165 .09 RPM
SRP021940_embryo 126 .23 RPM
SRP021940_placental_villous 116 .77 RPM
SRP021940_synovial_membrane 56 .33 RPM
SRP021940_testis 49 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017346 ortholog_one2many 3 retrogenes
retro_amel_1805, retro_amel_815, retro_amel_846,
Canis familiaris ENSCAFG00000008357 ortholog_one2many 2 retrogenes
retro_cfam_586, retro_cfam_816,
Callithrix jacchus ENSCJAG00000011234 possible_ortholog 1 retrogene
retro_cjac_2916,
Felis catus ENSFCAG00000025552 ortholog_one2one 3 retrogenes
retro_fcat_1068, retro_fcat_1888, retro_fcat_381,
Gorilla gorilla ENSGGOG00000005767 possible_ortholog 3 retrogenes
retro_ggor_2912, retro_ggor_449, retro_ggor_774,
Macaca mulatta ENSMMUG00000006000 possible_ortholog 1 retrogene
retro_mmul_1337,
Mustela putorius furo ENSMPUG00000004862 ortholog_one2many 1 retrogene
retro_mputfur_567,
Pongo abelii ENSPPYG00000007413 possible_ortholog 3 retrogenes
retro_pabe_3640, retro_pabe_823, retro_pabe_901,
Rattus norvegicus ENSRNOG00000011782 possible_ortholog 1 retrogene
retro_rnor_2695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_694 70.41 77.44
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Download FASTA sequences of all ENSECAG00000016504 retrocopies