Parental gene:

GOT2, ENSPPYG00000007413

Aliases:None
Description:Aspartate aminotransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5REB0]
Organism:Orangutan (Pongo abelii)
Coordinates:16:45877818..45918983(-)


>ENSPPYG00000007413
ATGGCCCTGCTGCACTCTGGCCGCGCCCTCCCCGGGATCGCCGCCGCCTTCCACCCGGGACTCGCCGCCGCGGCCTCTGC
CAGAGCCAGCTCCTGGTGGACCCATGTGGAAATGGGACCTCCAGATCCCATTCTGGGAGTCACTGAAGCCTTTAAGAGGG
ACACCAATAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGATGATAACGGAAAGCCTTACGTGCTGCCTAGCGTC
CGCAAGGCAGAGGCCCAGATTGCCGCAAAAAATTTGGACAAGGAATACCTGCCCATTGGGGGACTGGCTGAATTTTGCAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAGCGAAGTCTTGAAGAGTGGCCGGTTTGTCACTGTGCAGACCATTTCTG
GAACTGGAGCCTTAAGGATCGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTCTTTCTGCCCAAACCA
TCCTGGGGAAACCACACACCCATCTTCAGGGATGCTGGCATGCAGCTACAAGGTTATCGGTATTATGACCCCAAGACTTG
CGGTTTTGACTTCACAGGTGCTGTGGAGGATATTTCAAAAATACCAGAGCAGAGTGTTCTTCTTCTGCATGCCTGCGCCC
ACAATCCCACGGGAGTGGACCCGCGTCCGGAACAGTGGAAGGAAATAGCAACAGTGGTGAAGAAAAGGAATCTCTTTGCG
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGTGGTGATGGTGATAAGGATGCCTGGGCTGTGCGCCACTTCATCGAACA
GGGCATTAATGTTTGTCTCTGCCAATCATATGCCAAGAACATGGGCTTATATGGTGAGCGTGTAGGAGCCTTCACTATGG
TCTGCAAAGATGCGGATGAAGCCAAAAGGGTAGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCC
CTCAATGGGGCCCGGATTGCTGCTGCCATTCTGAACACCCCAGATTTGCGAAAACAATGGCTGCAAGAAGTGAAAGGCAT
GGCCGACCGCATCATTGGCATGCGGACTCAACTGGTCTCCAACCTCAAGAAGGAGGGTTCCACCCACAACTGGCAACACA
TCACCGACCAAATTGGCATGTTCTGTTTCACAGGGCTAAAGCCTGAACAGGTGGAGCGGCTGATCAAGGAGTTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGGGTCACCTCCAGCAACGTGGGCTACCTTGCCCATGCCATTCACCA
GGTCACCAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 95 .43 RPM
SRP007412_cerebellum 91 .93 RPM
SRP007412_heart 165 .27 RPM
SRP007412_kidney 70 .04 RPM
SRP007412_liver 158 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017346 possible_ortholog 3 retrogenes
retro_amel_1805, retro_amel_815, retro_amel_846,
Canis familiaris ENSCAFG00000008357 possible_ortholog 2 retrogenes
retro_cfam_586, retro_cfam_816,
Callithrix jacchus ENSCJAG00000011234 ortholog_one2one 1 retrogene
retro_cjac_2916,
Equus caballus ENSECAG00000016504 possible_ortholog 1 retrogene
retro_ecab_694,
Felis catus ENSFCAG00000025552 possible_ortholog 3 retrogenes
retro_fcat_1068, retro_fcat_1888, retro_fcat_381,
Homo sapiens ENSG00000125166 ortholog_one2one 4 retrogenes
retro_hsap_4687, retro_hsap_473, retro_hsap_960, retro_hsap_971,
Gorilla gorilla ENSGGOG00000005767 ortholog_one2one 3 retrogenes
retro_ggor_2912, retro_ggor_449, retro_ggor_774,
Macropus eugenii ENSMEUG00000012574 possible_ortholog 1 retrogene
retro_meug_2109,
Microcebus murinus ENSMICG00000008954 ortholog_one2many 1 retrogene
retro_mmur_480,
Macaca mulatta ENSMMUG00000006000 ortholog_one2one 1 retrogene
retro_mmul_1337,
Mustela putorius furo ENSMPUG00000004862 possible_ortholog 1 retrogene
retro_mputfur_567,
Mus musculus ENSMUSG00000031672 possible_ortholog 1 retrogene
retro_mmus_2701,
Oryctolagus cuniculus ENSOCUG00000003871 possible_ortholog 1 retrogene
retro_ocun_1516,
Otolemur garnettii ENSOGAG00000000551 possible_ortholog 2 retrogenes
retro_ogar_2182, retro_ogar_827,
Pan troglodytes ENSPTRG00000008185 ortholog_one2one 4 retrogenes
retro_ptro_3115, retro_ptro_354, retro_ptro_665, retro_ptro_670,
Rattus norvegicus ENSRNOG00000011782 possible_ortholog 1 retrogene
retro_rnor_2695,
Tupaia belangeri ENSTBEG00000001808 possible_ortholog 1 retrogene
retro_tbel_3799,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_823 84.26 54.42
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2. retro_pabe_901 86.93 70.93
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3. retro_pabe_3640 75.00 55.12
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Download FASTA sequences of all ENSPPYG00000007413 retrocopies