RetrogeneDB ID: retro_mputfur_567

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896921.1:5679076..5679851(+)
• Located in intron of: ENSMPUG00000007194

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000004862
• Aliases: None
• Description: None

Sequence

>retro_mputfur_567
AGACACACTGGCACGCAGCTGCAAGGTTATCAATACTATGACCCCAAGACTTGTAGCTTTAACTTCACAGGCACTAGGGA
GGATATTTCAAAAACACCAGAGCAAAGAGTTCTTCTGCACACTCCTGCCCACAATCCCATGGGAGTGGACCCTCATCCTG
AGCAATAGAAGGCAACAGCAATAGCAGTGAAAGAAGAATCTCTCTAGTTCTTTGACATGGCCTACCAAGGTTTTGTCAGT
AGTGATGATAACAAGGGAGCCTGGGTTGTGCACCACTTCGCTGAAGAGGGCATTAATGTTTGTCTCTGCTAATCCCATAC
CAAGAACATGGGCTTCTATGGTAAGCATGTGGGAGACTTCACTGGGCTCTGCAAAGATGTTGAGGTCAGAGGGGTGGAGT
CACAAATGAAGACCTTGATGTTCCTCTGTAAATTTCAGCCCTCCTCTCAATAGAGCTCAGGTTGCCTTGACCATTCTGAC
CAGCCCAGATTTTCCAAAACAATAGTTGCAGGAAGTGCAAGTCATGGCCAACTGCATCATTAGTTTGCAGATTCAGCTGG
TCTCGAACCTCAAGAGGGAGGGCTTCTCCCAACCATGCACAGCACATCCCCGACCAGATTAGCCTGTTTTGTTTCAGAGG
GCTAAAGCCTGAACAGGTGGAGCAGCTGACCAAGGAGTTCTCCATCTAAACAACAGAGGTCAGCTGCATCCCTGTGGCAA
GGGTCATCTTGGACAACTGGGCTACCTTGTTCATCACATTCACCGGGTCACCAAG

Alignment

ORF - retro_mputfur_567 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.36 %
• Parental protein coverage: 60.7 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RDAGMQLHGYRYYDPKTCGFDFTGALEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLF
          R..G.QL.GY.YYDPKTC.F.FTG..EDISK.P.Q.VLL.H..AHNP.GVDP.PEQ.K..A..VK...L.
Retrocopy RHTGTQLQGYQYYDPKTCSFNFTGTREDISKTPEQRVLL-HTPAHNPMGVDPHPEQ*KATAIAVKEESL*

Parental  AFFDMAYQGFASGDGNKDAWAVRYFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLK
          .FFDMAYQGF.S.D.NK.AW.V..F.E.GINVCLC.S..KNMG.YG..VG.FT..CKD..E...VESQ.K
Retrocopy -FFDMAYQGFVSSDDNKGAWVVHHFAEEGINVCLC*SHTKNMGFYGKHVGDFTGLCKDV-EVRGVESQMK

Parental  ILI-RPMYSNPPINGARIASTILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEG-SSHNWQHITDQ
          .L........PP.N.A..A.TILTSPD..KQ.LQEV..MA..IIS...QLVSNLK.EG.S....QHI.DQ
Retrocopy TLM>SSVNFSPPLNRAQVALTILTSPDFPKQ*LQEVQVMANCIISLQIQLVSNLKREG>SPNHAQHIPDQ

Parental  IGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVT-SGNVGYLAHAIHQVTK
          I..FCF.GLKPEQVE.LTKEFSI..T....I.VA.V...G..GYL.H.IH.VTK
Retrocopy ISLFCFRGLKPEQVEQLTKEFSI*TTEVSCIPVARVI<LGQLGYLVHHIHRVTK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_567 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_567 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 19 parental genes, and 35 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017346	3 retrocopies	retro_amel_1805, retro_amel_815, retro_amel_846,
Canis familiaris	ENSCAFG00000008357	2 retrocopies	retro_cfam_586, retro_cfam_816,
Callithrix jacchus	ENSCJAG00000011234	1 retrocopy	retro_cjac_2916,
Equus caballus	ENSECAG00000016504	1 retrocopy	retro_ecab_694,
Felis catus	ENSFCAG00000025552	3 retrocopies	retro_fcat_1068, retro_fcat_1888, retro_fcat_381,
Homo sapiens	ENSG00000125166	4 retrocopies	retro_hsap_4687, retro_hsap_473, retro_hsap_960, retro_hsap_971,
Gorilla gorilla	ENSGGOG00000005767	3 retrocopies	retro_ggor_2912, retro_ggor_449, retro_ggor_774,
Macropus eugenii	ENSMEUG00000012574	1 retrocopy	retro_meug_2109,
Microcebus murinus	ENSMICG00000008954	1 retrocopy	retro_mmur_480,
Macaca mulatta	ENSMMUG00000006000	1 retrocopy	retro_mmul_1337,
Mustela putorius furo	ENSMPUG00000004862	1 retrocopy	retro_mputfur_567 ,
Mustela putorius furo	ENSMPUG00000016996	1 retrocopy	retro_mputfur_861,
Mus musculus	ENSMUSG00000031672	1 retrocopy	retro_mmus_2701,
Oryctolagus cuniculus	ENSOCUG00000003871	1 retrocopy	retro_ocun_1516,
Otolemur garnettii	ENSOGAG00000000551	2 retrocopies	retro_ogar_2182, retro_ogar_827,
Pongo abelii	ENSPPYG00000007413	3 retrocopies	retro_pabe_3640, retro_pabe_823, retro_pabe_901,
Pan troglodytes	ENSPTRG00000008185	4 retrocopies	retro_ptro_3115, retro_ptro_354, retro_ptro_665, retro_ptro_670,
Rattus norvegicus	ENSRNOG00000011782	1 retrocopy	retro_rnor_2695,
Tupaia belangeri	ENSTBEG00000001808	1 retrocopy	retro_tbel_3799,