Parental gene:

GOT2, ENSFCAG00000025552

Aliases:None
Description:glutamic-oxaloacetic transaminase 2, mitochondrial [Source:HGNC Symbol;Acc:4433]
Organism:Cat (Felis catus)
Coordinates:E2:37703643..37723656(-)


>ENSFCAG00000025552
ATGGCGCTGCTGCACACCGGCCGCGTCCTGTCCGGGGTCGCCGCCGCTTTCCACCCGGGCCTCGCTGCCGCGGCTTCTGC
CAGAGCCAGCTCCTGGTGGACCCATGTGGAAATGGGGCCCCCAGATCCCATCCTGGGAGTCACAGAAGCCTTTAAGAGAG
ACACCAACAGCAAAAAGATGAATCTGGGAGTTGGTGCCTACCGGGACGATAATGGAAAGCCTTATGTGCTTCCTAGTGTC
CGGAAGGCAGAGGCCCAGATTGCTGCAAAAAATTTGGACAAAGAATACCTGCCCATTGCAGGACTTGCTGAATTTTGTAA
GGCATCTGCAGAACTAGCCCTGGGTGAGAACAATGAAGTGTTGAAAAGTAGCCGGTATGTCACCGTGCAGACCATTTCTG
GAACCGGGGCCTTGAGGATTGGAGCCAGTTTTCTGCAAAGATTTTTTAAGTTCAGCCGAGATGTTTATCTGCCCAAACCA
TCCTGGGGAAATCACACACCCGTCTTCAGGGACGCTGGCATGCAGCTACACAGTTATCGATACTATGACCCCAAGACATG
TGGCTTTGACTTCACAGGCGCTATAGAGGACATTTCGAAAATGCCACAGCAAAGTGTTCTTCTCCTGCATGCCTGTGCCC
ACAATCCCACGGGAGTGGACCCTCGCCCTGAGCAGTGGAAGGAAATAGCAACAGTGGTAAAGAAAAACAACCTCTTTGCA
TTCTTTGACATGGCCTACCAAGGCTTTGCCAGCGGTGATGGTAACAAGGATGCCTGGGCTGTACGCCACTTCATCGAACA
GGGCATTAATGTTTGTCTCTGCCAATCCTATGCCAAGAACATGGGCTTGTACGGTGAGCGTGTGGGAGCCTTCACTGTGG
TCTGCAAAGATGCTGATGAAGCCAAAAGGGTGGAGTCACAGTTGAAGATCTTGATCCGTCCCATGTATTCCAACCCTCCA
ATCAACGGGGCCCGGATTGCCTCGACCATCCTAACCAGCCCTGACCTGCGAAAACAATGGTTGCAGGAAGTAAAAGGCAT
GGCTGACCGCATCATTAGCATGAGGACTCAGCTGGTCTCCAACCTCAAGAAGGAGGGCTCCTCTCACAACTGGCAGCACA
TCACTGACCAGATTGGCATGTTTTGTTTCACAGGACTGAAGCCTGAACAGGTGGAGAGGCTGACCAAGGAATTCTCCATC
TACATGACAAAGGATGGCCGCATCTCTGTGGCAGGAGTCACCTCGGGCAACGTGGGCTACCTTGCCCACGCCATTCACCA
GGTCACCAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 116 .38 RPM
SRP017611_kidney 87 .70 RPM
SRP017611_liver 122 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017346 ortholog_one2many 3 retrogenes
retro_amel_1805, retro_amel_815, retro_amel_846,
Canis familiaris ENSCAFG00000008357 ortholog_one2many 2 retrogenes
retro_cfam_586, retro_cfam_816,
Callithrix jacchus ENSCJAG00000011234 possible_ortholog 1 retrogene
retro_cjac_2916,
Equus caballus ENSECAG00000016504 ortholog_one2one 1 retrogene
retro_ecab_694,
Gorilla gorilla ENSGGOG00000005767 possible_ortholog 3 retrogenes
retro_ggor_2912, retro_ggor_449, retro_ggor_774,
Macaca mulatta ENSMMUG00000006000 possible_ortholog 1 retrogene
retro_mmul_1337,
Mustela putorius furo ENSMPUG00000004862 ortholog_one2many 1 retrogene
retro_mputfur_567,
Pongo abelii ENSPPYG00000007413 possible_ortholog 3 retrogenes
retro_pabe_3640, retro_pabe_823, retro_pabe_901,
Rattus norvegicus ENSRNOG00000011782 possible_ortholog 1 retrogene
retro_rnor_2695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_381 70.12 57.21
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2. retro_fcat_1068 69.05 57.21
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3. retro_fcat_1888 71.19 69.30
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Download FASTA sequences of all ENSFCAG00000025552 retrocopies