Parental gene:

LSM5, ENSECAG00000018445

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Horse (Equus caballus)
Coordinates:4:62764997..62768102(-)


>ENSECAG00000018445
ATGGCGGCTAACGCGACCACTAACCCGTCGCAGCTGCTGCCTCTAGAGCTTGTGGACAAGTGTATAGGATCAAGAATTCA
CATTGTGATGAAGAGTGATAAGGAAATTGTTGGCACGCTTCTAGGATTTGATGACTTTGTCAATATGGTACTGGAAGATG
TCACTGAGTTTGAAATCACACCAGAAGGAAGAAGGATTACTAAATTAGATCAGATTTTGCTAAATGGCAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGCCCTGAAGTATGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 5 .49 RPM
SRP021940_cerebellum 7 .17 RPM
SRP021940_embryo 4 .99 RPM
SRP021940_placental_villous 5 .34 RPM
SRP021940_synovial_membrane 3 .51 RPM
SRP021940_testis 4 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006700 ortholog_one2one 1 retrogene
retro_amel_453,
Callithrix jacchus ENSCJAG00000009185 ortholog_one2one 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Cavia porcellus ENSCPOG00000010421 ortholog_one2one 1 retrogene
retro_cpor_607,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Mus musculus ENSMUSG00000091625 ortholog_one2one 4 retrogenes
retro_mmus_1568, retro_mmus_423, retro_mmus_826, retro_mmus_837,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pan troglodytes ENSPTRG00000019057 ortholog_one2one 1 retrogene
retro_ptro_2862,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Rattus norvegicus ENSRNOG00000042126 ortholog_one2one 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tupaia belangeri ENSTBEG00000004876 ortholog_one2one 11 retrogenes
retro_tbel_1043, retro_tbel_1107, retro_tbel_1217, retro_tbel_1323, retro_tbel_1549, retro_tbel_1865, retro_tbel_2203, retro_tbel_2908, retro_tbel_2956, retro_tbel_3330, retro_tbel_4335,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_809 52.73 58.24
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Download FASTA sequences of all ENSECAG00000018445 retrocopies