Parental gene:

Lsm5, ENSMUSG00000091625

Aliases:Lsm5, 2010208O10Rik, 2310034K10Rik
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913623]
Organism:Mouse (Mus musculus)
Coordinates:6:56701062..56704692(-)


>ENSMUSG00000091625
ATGGCGGCTAACGCGACCACGAACCCGTCCCAACTCCTGCCACTAGAGCTTGTGGACAAATGTATAGGGTCAAGAATTCA
CATTGTGATGAAGAGTGATAAAGAAATTGTCGGGACACTTCTAGGATTTGATGACTTTGTCAATATGGTGTTGGAAGATG
TCACAGAATTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGATCAAATTCTACTAAATGGAAATAATATAACA
ATGCTGGTTCCCGGAGGAGAAGGGCCTGAAGTATGA

Library Parental gene expression (RPM)
SRP007412_brain 1 .59 RPM
SRP007412_cerebellum 1 .69 RPM
SRP007412_heart 1 .28 RPM
SRP007412_kidney 1 .23 RPM
SRP007412_liver 1 .37 RPM
SRP007412_testis 1 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006700 ortholog_one2one 1 retrogene
retro_amel_453,
Bos taurus ENSBTAG00000002332 ortholog_one2one 3 retrogenes
retro_btau_1012, retro_btau_1123, retro_btau_1313,
Callithrix jacchus ENSCJAG00000009185 ortholog_one2many 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Cavia porcellus ENSCPOG00000010421 ortholog_one2one 1 retrogene
retro_cpor_607,
Equus caballus ENSECAG00000018445 ortholog_one2one 1 retrogene
retro_ecab_809,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Loxodonta africana ENSLAFG00000029579 ortholog_one2one 3 retrogenes
retro_lafr_1000, retro_lafr_368, retro_lafr_922,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pan troglodytes ENSPTRG00000019057 ortholog_one2one 1 retrogene
retro_ptro_2862,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Rattus norvegicus ENSRNOG00000042126 ortholog_one2one 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tupaia belangeri ENSTBEG00000004876 ortholog_one2one 11 retrogenes
retro_tbel_1043, retro_tbel_1107, retro_tbel_1217, retro_tbel_1323, retro_tbel_1549, retro_tbel_1865, retro_tbel_2203, retro_tbel_2908, retro_tbel_2956, retro_tbel_3330, retro_tbel_4335,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_423 97.56 90.11
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmus_826 76.67 63.74
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmus_837 81.54 71.43
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmus_1568 97.83 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000091625 retrocopies