Parental gene: | Lsm5, ENSMUSG00000091625 |
| Aliases: | Lsm5, 2010208O10Rik, 2310034K10Rik |
| Description: | LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913623] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 6:56701062..56704692(-) |
>ENSMUSG00000091625
ATGGCGGCTAACGCGACCACGAACCCGTCCCAACTCCTGCCACTAGAGCTTGTGGACAAATGTATAGGGTCAAGAATTCA
CATTGTGATGAAGAGTGATAAAGAAATTGTCGGGACACTTCTAGGATTTGATGACTTTGTCAATATGGTGTTGGAAGATG
TCACAGAATTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGATCAAATTCTACTAAATGGAAATAATATAACA
ATGCTGGTTCCCGGAGGAGAAGGGCCTGAAGTATGA
ATGGCGGCTAACGCGACCACGAACCCGTCCCAACTCCTGCCACTAGAGCTTGTGGACAAATGTATAGGGTCAAGAATTCA
CATTGTGATGAAGAGTGATAAAGAAATTGTCGGGACACTTCTAGGATTTGATGACTTTGTCAATATGGTGTTGGAAGATG
TCACAGAATTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGATCAAATTCTACTAAATGGAAATAATATAACA
ATGCTGGTTCCCGGAGGAGAAGGGCCTGAAGTATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 1 .59 RPM |
| SRP007412_cerebellum | 1 .69 RPM |
| SRP007412_heart | 1 .28 RPM |
| SRP007412_kidney | 1 .23 RPM |
| SRP007412_liver | 1 .37 RPM |
| SRP007412_testis | 1 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006700 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000002332 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009185 | ortholog_one2many | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000010421 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000018445 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000018068 | possible_ortholog | 8 retrogenes | |
| Loxodonta africana | ENSLAFG00000029579 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015268 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013892 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000017661 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019057 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000009786 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000042126 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000004876 | ortholog_one2one | 11 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004237 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_423 | 97.56 | 90.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_826 | 76.67 | 63.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_837 | 81.54 | 71.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1568 | 97.83 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000091625 retrocopies