Parental gene:

ATP5A1, ENSECAG00000021561

Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:823]
Organism:Horse (Equus caballus)
Coordinates:8:65155769..65164314(-)


>ENSECAG00000021561
ATGCTGTCTGTGCGCGTCGCGGCCGTGGCCCGCGCCCTCCCTCGTCGGGCCGGGCTGGTCTCCAGAAATGCTTTGGGATC
ATCCTTCATTGCTGCAAGGAACCTCCATGCCTCTAATACTCGTCTTCAGAAGACTGGCACTGCTGAGATGTCCTCTATTC
TTGAAGAGCGTATTCTTGGAGCTGATACCTCTGTTGATCTTGAAGAGACTGGGCGTGTCTTAAGTATTGGAGATGGTATT
GCCCGTGTACATGGGCTGAGAAATGTTCAAGCAGAAGAAATGGTAGAGTTTTCTTCAGGTTTAAAGGGTATGTCTCTGAA
CTTGGAACCTGACAATGTTGGTGTTGTCGTGTTTGGAAATGATAAACTAATTAAGGAAGGAGATATTGTGAAGAGAACAG
GAGCCATTGTGGATGTTCCAGTTGGCGAGGAGCTGTTAGGTCGCGTAGTAGATGCCCTTGGTAATGCCATTGATGGAAAG
GGTCCAATTGGTTCTAAGACCCGAAGGCGAGTTGGCCTGAAAGCCCCTGGGATCATTCCTCGAATCTCTGTGCGGGAGCC
CATGCAGACTGGCATTAAGGCTGTGGATAGCTTGGTGCCAATTGGTCGTGGTCAGCGTGAGCTGATTATTGGTGACCGAC
AGACTGGCAAAACATCAATTGCTATTGACACAATCATCAACCAGAAGCGTTTCAATGACGGAACTGATGAAAAGAAGAAG
CTGTACTGTATCTATGTTGCTATTGGTCAAAAGAGATCCACTGTCGCCCAGTTGGTGAAGAGACTTACAGATGCAGATGC
CATGAAGTACACCATTGTGGTTTCAGCTACTGCTTCTGATGCTGCTCCACTTCAGTACTTGGCTCCTTATTCTGGCTGTT
CTATGGGAGAATATTTCAGGGATAATGGCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGCTGTTGCTTAC
CGTCAGATGTCCCTGCTGCTCCGCCGACCCCCTGGTCGTGAGGCCTATCCTGGTGATGTGTTCTACCTGCACTCCCGTCT
GCTAGAGAGAGCAGCCAAAATGAATGATGCTTTTGGTGGTGGCTCCTTGACTGCTTTACCAGTCATAGAAACACAAGCTG
GTGATGTGTCTGCTTACATTCCAACAAATGTCATCTCCATCACTGATGGACAGATCTTCTTGGAAACAGAATTGTTTTAC
AAAGGTATTCGCCCTGCCATTAACGTTGGTTTGTCTGTGTCTCGCGTCGGATCTGCTGCCCAAACCAGGGCCATGAAGCA
GGTGGCAGGTACCATGAAGCTGGAATTGGCTCAGTATCGTGAGGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTTGATG
CTGCCACGCAACAACTCTTAAGCCGTGGTGTGCGTCTGACTGAGTTGCTGAAGCAAGGACAGTATGCTCCCATGGCTATT
GAGGAACAAGTGGCTGTTATCTATGCTGGCGTAAGGGGGTATCTTGATAAACTGGAGCCCAGCAAGATCACAAAGTTTGA
GAGTGCCTTCTTGGCTCATGTTATCAGCCAACACCAAGCCCTGTTGGGCACTATCAGGACTGATGGAAAGATCTCAGAAC
AGTCAGATGCAAAGCTGAAAGAGATTGTGACAAACTTCTTGGCCGGATTTGAAGCTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 310 .76 RPM
SRP021940_embryo 610 .24 RPM
SRP021940_cerebellum 814 .25 RPM
SRP021940_testis 427 .59 RPM
SRP021940_placental_villous 390 .90 RPM
SRP021940_articular_cartilage 252 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002507 ortholog_one2one 2 retrogenes
retro_btau_1380, retro_btau_1426,
Canis familiaris ENSCAFG00000017648 ortholog_one2many 2 retrogenes
retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus ENSDNOG00000006331 ortholog_one2one 2 retrogenes
retro_dnov_1740, retro_dnov_2525,
Homo sapiens ENSG00000152234 ortholog_one2one 1 retrogene
retro_hsap_1702,
Gorilla gorilla ENSGGOG00000016560 ortholog_one2one 1 retrogene
retro_ggor_1275,
Meleagris gallopavo ENSMGAG00000009963 possible_ortholog 1 retrogene
retro_mgal_14,
Microcebus murinus ENSMICG00000017500 ortholog_one2one 1 retrogene
retro_mmur_1210,
Myotis lucifugus ENSMLUG00000009856 ortholog_one2one 1 retrogene
retro_mluc_1198,
Macaca mulatta ENSMMUG00000003570 ortholog_one2one 1 retrogene
retro_mmul_1208,
Mustela putorius furo ENSMPUG00000000923 ortholog_one2many 1 retrogene
retro_mputfur_601,
Nomascus leucogenys ENSNLEG00000010973 ortholog_one2one 1 retrogene
retro_nleu_1334,
Oryctolagus cuniculus ENSOCUG00000003967 ortholog_one2one 1 retrogene
retro_ocun_1235,
Pongo abelii ENSPPYG00000009130 ortholog_one2one 1 retrogene
retro_pabe_1363,
Pan troglodytes ENSPTRG00000009991 ortholog_one2one 1 retrogene
retro_ptro_1151,
Sarcophilus harrisii ENSSHAG00000017177 possible_ortholog 1 retrogene
retro_shar_109,
Tarsius syrichta ENSTSYG00000007804 ortholog_one2one 1 retrogene
retro_tsyr_1186,
Tursiops truncatus ENSTTRG00000005118 ortholog_one2one 1 retrogene
retro_ttru_159,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_788 74.84 56.52
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Download FASTA sequences of all ENSECAG00000021561 retrocopies