Parental gene:

ATP5A1, ENSPTRG00000009991

Aliases:None
Description:Pan troglodytes ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle (ATP5A1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001135736]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:18:42024052..42038168(-)


>ENSPTRG00000009991
ATGCTGTCCGTGCGCGTTGCTGCGGCCGTGGTCCGCGCCCTTCCTCGGCGGGCCGGACTGGTCTCCAGAAATGCTTTGGG
TTCATCTTTCATTGCTGCAAGGAACTTCCATGCCTCTAACACTCATCTTCAGAAGACTGGGACTGCTGAGATGTCCTCTA
TTCTTGAAGAGCGTATTCTTGGAGCTGATACCTCTGTTGATCTTGAAGAAACTGGGCGTGTCTTAAGTATTGGTGATGGT
ATTGCCCGCGTACATGGGCTGAGGAATGTTCAAGCAGAAGAAATGGTAGAGTTTTCTTCAGGCTTAAAGGGTATGTCCTT
GAACTTGGAACCTGACAATGTTGGTGTTGTTGTGTTTGGAAATGATAAACTAATTAAGGAAGGAGATATAGTGAAGAGGA
CAGGAGCCATTGTGGACGTTCCAGTTGGTGAGGAGCTGTTGGGTCGTGTAGTTGATGCCCTTGGTAATGCTATTGATGGA
AAGGGTCCAATTGGTTCCAAGACGCGTAGGCGAGTTGGTCTGAAAGCCCCCGGTATCATTCCTCGAATTTCAGTGCGGGA
ACCAATGCAGACTGGCATTAAGGCTGTGGATAGCTTGGTGCCAATTGGTCGTGGTCAGCGTGAGCTGATTATTGGTGACC
GACAGACTGGGAAAACCTCAATTGCTATTGACACAATCATTAACCAGAAACGTTTCAATGATGGATCTGATGAAAAGAAG
AAGCTGTACTGTATTTATGTTGCTATTGGTCAAAAGAGATCCACTGTTGCCCAGTTGGTGAAGAGACTTACAGATGCAGA
TGCCATGAAGTACACCATTGTGGTGTCGGCTACGGCCTCGGATGCTGCCCCACTTCAGTACCTGGCTCCTTACTCTGGCT
GTTCCATGGGAGAGTATTTTAGAGACAATGGCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGCTGTTGCT
TACCGTCAGATGTCTCTGTTGCTCCGCCGACCCCCTGGTCGTGAGGCCTATCCTGGTGATGTGTTCTACCTACACTCCCG
GTTGCTGGAGAGAGCAGCCAAAATGAATGATGCTTTTGGTGGTGGCTCCTTGACTGCTTTGCCAGTCATAGAAACACAGG
CTGGTGATGTGTCTGCTTACATTCCAACAAATGTCATTTCCATCACTGACGGACAGATCTTCTTGGAAACAGAATTGTTT
TACAAAGGTATCCGCCCTGCAATTAACGTTGGTCTGTCTGTATCTCGTGTCGGATCCGCTGCCCAAACCAGGGCTATGAA
GCAGGTGGCAGGTACCATGAAGCTGGAATTGGCTCAGTATCGTGAGGTTGCTGCTTTTGCCCAGTTCGGTTCTGACCTCG
ATGCTGCCACTCAACAACTTTTGAGTCGTGGCGTGCGTCTAACTGAGTTGCTGAAGCAAGGACAGTATTCTCCCATGGCT
ATTGAAGAACAAGTGGCTGTTATCTATGCGGGTGTAAGGGGATATCTTGATAAACTGGAGCCCAGCAAGATTACAAAGTT
TGAGAATGCTTTCTTGTCTCATGTCGTCAGCCAGCACCAAGCCTTGTTGGGCACTATCAGGGCTGATGGAAAGATCTCAG
AACAATCAGATGCAAAGCTGAAAGAGATTGTAACAAACTTCTTGGCTGGATTTGAAGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 411 .90 RPM
SRP007412_cerebellum 448 .82 RPM
SRP007412_heart 1023 .88 RPM
SRP007412_kidney 788 .29 RPM
SRP007412_liver 218 .17 RPM
SRP007412_testis 173 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002507 ortholog_one2one 2 retrogenes
retro_btau_1380, retro_btau_1426,
Canis familiaris ENSCAFG00000017648 possible_ortholog 2 retrogenes
retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus ENSDNOG00000006331 ortholog_one2one 2 retrogenes
retro_dnov_1740, retro_dnov_2525,
Equus caballus ENSECAG00000021561 ortholog_one2one 1 retrogene
retro_ecab_788,
Homo sapiens ENSG00000152234 ortholog_one2one 1 retrogene
retro_hsap_1702,
Gorilla gorilla ENSGGOG00000016560 ortholog_one2one 1 retrogene
retro_ggor_1275,
Meleagris gallopavo ENSMGAG00000009963 possible_ortholog 1 retrogene
retro_mgal_14,
Microcebus murinus ENSMICG00000017500 ortholog_one2one 1 retrogene
retro_mmur_1210,
Myotis lucifugus ENSMLUG00000009856 ortholog_one2one 1 retrogene
retro_mluc_1198,
Macaca mulatta ENSMMUG00000003570 ortholog_one2one 1 retrogene
retro_mmul_1208,
Mustela putorius furo ENSMPUG00000000923 possible_ortholog 1 retrogene
retro_mputfur_601,
Nomascus leucogenys ENSNLEG00000010973 ortholog_one2one 1 retrogene
retro_nleu_1334,
Pongo abelii ENSPPYG00000009130 ortholog_one2one 1 retrogene
retro_pabe_1363,
Sarcophilus harrisii ENSSHAG00000017177 possible_ortholog 1 retrogene
retro_shar_109,
Tarsius syrichta ENSTSYG00000007804 ortholog_one2one 1 retrogene
retro_tsyr_1186,
Tursiops truncatus ENSTTRG00000005118 ortholog_one2one 1 retrogene
retro_ttru_159,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1151 86.77 77.40
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000009991 retrocopies