RetrogeneDB ID: retro_mluc_1198

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429805:5463469..5464479(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028296
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ATP5A1
• Ensembl ID: ENSMLUG00000009856
• Aliases: None
• Description: ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1PEN6]

Sequence

>retro_mluc_1198
ATGCTCTCCGTGCATGTCAGTGGGGTCGTAGCTCGTGCCCTCCCTCGACAGGCCAGACTGGTCTCCAAAAATGCTTTGGG
ATCATCCTTCATTGCTACAAGGAATCTCCATGCCTCTAACACTCGTCTTCAGAAGATGGGCACTGCCGAGATGTCCTCTA
TTCTTGAAGAGCAAATTTTTGGAGCTGATACCTCTGTTGACCTTGAAGAGACTGGGCGTGTCTTAAGTATTGGTGATGGT
ATTGCCCGAGTACATGGGCTGAGGAATGTTCAAGCTGAAGAAATGGTAGAGTTTTCTTCAGGCTTAAAGGGTATGTCTCT
GAACTTGGAACCTGACAATGTTGGTGTTGTCGTGTTTGGAAATGATAAACTAATTAAGGAAGGAGATGTTGTGAAGCGAA
CAGGAGCCATTGTGGATGTTCCTGTTGGCGAGGAGCTGTTGGGTCGTGTAGCAGATGCCCTTGGTAATGCCATTGATGGG
AAAGTTCTAATTGGTTCCAAGATCCATAGGTGAGTGTGCCTGAAAGCCCCTGGGATCATTCCTCGAATCTCTGTGCGGGA
ACCAATGCAGACATCCATTAAGGCTGTGGATAGCTTGGTGCCCATTGGTGGTGGTCAGTGTGAGCTGATTATTGGTGACC
GACGGACTGGCAAAACATCAATTGCTATTGACACAATCATTAACCAGAAACGTTTCAGTGATGGAACTGATGAAAAGAAG
AAGCTGTACTGTATCTATGTTACTATTGGTCAGAAGAGATCCACTGTTGCCCAGCTGGTGAAGAGACTTACAGATGCAGA
TGCCATGAAGTACACCATTGTGGTTTCAGCTACCGCTTCTGATACTGCCCCACTTCAGTACCTGGCTCCTTATCTGGCTG
TTCTATGGGAGAATATTTCAGGGATAATGGCGAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGCTGTTGCTT
ATTGTCAGATGTCTCTGCTGCTGCGCCGACCACCTGGTGATGTGTTCTAC

Alignment

ORF - retro_mluc_1198 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.53 %
• Parental protein coverage: 60.94 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLSVRVAAAVARALPRRAGLVSKNALGSSFIATRNLHASNTQLQKIGTAEMSSILEERILGADTSVDLEE
          MLSV.V...VARALPR.A.LVSKNALGSSFIATRNLHASNT.LQK.GTAEMSSILEE.I.GADTSVDLEE
Retrocopy MLSVHVSGVVARALPRQARLVSKNALGSSFIATRNLHASNTRLQKMGTAEMSSILEEQIFGADTSVDLEE

Parental  TGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDV
          TGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGD.VKRTGAIVDV
Retrocopy TGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDVVKRTGAIVDV

Parental  PVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELI
          PVGEELLGRV.DALGNAIDGK..IGSK..R.V.LKAPGIIPRISVREPMQT.IKAVDSLVPIG.GQ.ELI
Retrocopy PVGEELLGRVADALGNAIDGKVLIGSKIHR*VCLKAPGIIPRISVREPMQTSIKAVDSLVPIGGGQCELI

Parental  IGDRQTGKTSIAIDTIINQKRFNEGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATAS
          IGDR.TGKTSIAIDTIINQKRF..GTDEKKKLYCIYV.IGQKRSTVAQLVKRLTDADAMKYTIVVSATAS
Retrocopy IGDRRTGKTSIAIDTIINQKRFSDGTDEKKKLYCIYVTIGQKRSTVAQLVKRLTDADAMKYTIVVSATAS

Parental  DAAPLQYLAPY-SGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY
          D.APLQYLAPY.SGCSMGEYFRDNG.HALIIYDDLSKQAVAY.QMSLLLRRPPG...Y
Retrocopy DTAPLQYLAPY<SGCSMGEYFRDNGEHALIIYDDLSKQAVAYCQMSLLLRRPPGDVFY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1198 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002507	2 retrocopies	retro_btau_1380, retro_btau_1426,
Canis familiaris	ENSCAFG00000017648	2 retrocopies	retro_cfam_1483, retro_cfam_516,
Dasypus novemcinctus	ENSDNOG00000006331	2 retrocopies	retro_dnov_1740, retro_dnov_2525,
Equus caballus	ENSECAG00000021561	1 retrocopy	retro_ecab_788,
Homo sapiens	ENSG00000152234	1 retrocopy	retro_hsap_1702,
Gorilla gorilla	ENSGGOG00000016560	1 retrocopy	retro_ggor_1275,
Meleagris gallopavo	ENSMGAG00000009963	1 retrocopy	retro_mgal_14,
Microcebus murinus	ENSMICG00000017500	1 retrocopy	retro_mmur_1210,
Myotis lucifugus	ENSMLUG00000009856	1 retrocopy	retro_mluc_1198 ,
Macaca mulatta	ENSMMUG00000003570	1 retrocopy	retro_mmul_1208,
Mustela putorius furo	ENSMPUG00000000923	1 retrocopy	retro_mputfur_601,
Nomascus leucogenys	ENSNLEG00000010973	1 retrocopy	retro_nleu_1334,
Pongo abelii	ENSPPYG00000009130	1 retrocopy	retro_pabe_1363,
Pan troglodytes	ENSPTRG00000009991	1 retrocopy	retro_ptro_1151,
Sarcophilus harrisii	ENSSHAG00000017177	1 retrocopy	retro_shar_109,
Tarsius syrichta	ENSTSYG00000007804	1 retrocopy	retro_tsyr_1186,
Tursiops truncatus	ENSTTRG00000005118	1 retrocopy	retro_ttru_159,