Parental gene:

RPL30, ENSEEUG00000000964

Aliases:None
Description:ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5547:19076..21857(-)


>ENSEEUG00000000964
ATGGTGGCCGCGAAGAAGACGAAAAAGTCGCTGGAGTCCATCAACTCGAGGCTCCAGCTGGTGATGAAAAGCGGGAAGTA
CGTGCTGGGATACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCCAAGCTGGTCATCCTGGCCAACAACTGCCCTG
CCTTGAGGAAATCAGAAATTGAGTACTATGCCATGTTGGCCAAAACTGGTGTTCATCACTACAGTGGCAATAATATTGAA
TTAGGCACAGCATGTGGAAAATACTACAGAGTCTGCACACTGGCCATCATTGATCCAGGTGATTCTGATATCATCAGAAG
CATGCCAGAACAGACTGGTGAAAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 22 .40 RPM
SRP017611_kidney 52 .51 RPM
SRP017611_liver 30 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 ortholog_one2many 2 retrogenes
retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
retro_btau_34, retro_btau_992,
Callithrix jacchus ENSCJAG00000015549 ortholog_one2many 4 retrogenes
retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Cavia porcellus ENSCPOG00000026030 ortholog_one2one 4 retrogenes
retro_cpor_1287, retro_cpor_1325, retro_cpor_505, retro_cpor_764,
Dasypus novemcinctus ENSDNOG00000013828 ortholog_one2one 12 retrogenes
retro_dnov_1331, retro_dnov_1754, retro_dnov_1883, retro_dnov_2094, retro_dnov_2208, retro_dnov_2455, retro_dnov_2484, retro_dnov_2513, retro_dnov_2670, retro_dnov_293, retro_dnov_334, retro_dnov_415,
Dipodomys ordii ENSDORG00000012383 ortholog_one2one 10 retrogenes
retro_dord_111, retro_dord_204, retro_dord_361, retro_dord_407, retro_dord_49, retro_dord_69, retro_dord_710, retro_dord_736, retro_dord_83, retro_dord_97,
Equus caballus ENSECAG00000021705 ortholog_one2one 7 retrogenes
retro_ecab_1094, retro_ecab_227, retro_ecab_406, retro_ecab_508, retro_ecab_599, retro_ecab_63, retro_ecab_945,
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Homo sapiens ENSG00000156482 ortholog_one2one 9 retrogenes
retro_hsap_1104, retro_hsap_1947, retro_hsap_2229, retro_hsap_2767, retro_hsap_3509, retro_hsap_3959, retro_hsap_4000, retro_hsap_4652, retro_hsap_475,
Loxodonta africana ENSLAFG00000002077 possible_ortholog 2 retrogenes
retro_lafr_122, retro_lafr_882,
Microcebus murinus ENSMICG00000004620 ortholog_one2one 3 retrogenes
retro_mmur_258, retro_mmur_644, retro_mmur_693,
Myotis lucifugus ENSMLUG00000003637 ortholog_one2one 11 retrogenes
retro_mluc_1425, retro_mluc_2001, retro_mluc_2274, retro_mluc_2295, retro_mluc_2409, retro_mluc_409, retro_mluc_583, retro_mluc_639, retro_mluc_827, retro_mluc_838, retro_mluc_894,
Macaca mulatta ENSMMUG00000020073 possible_ortholog 12 retrogenes
retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Oryctolagus cuniculus ENSOCUG00000017386 possible_ortholog 4 retrogenes
retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Pan troglodytes ENSPTRG00000020454 ortholog_one2one 10 retrogenes
retro_ptro_1146, retro_ptro_1302, retro_ptro_1575, retro_ptro_1874, retro_ptro_2334, retro_ptro_2380, retro_ptro_2688, retro_ptro_3091, retro_ptro_356, retro_ptro_693,
Pteropus vampyrus ENSPVAG00000014461 ortholog_one2one 9 retrogenes
retro_pvam_1079, retro_pvam_1090, retro_pvam_1099, retro_pvam_161, retro_pvam_276, retro_pvam_279, retro_pvam_407, retro_pvam_506, retro_pvam_561,
Rattus norvegicus ENSRNOG00000005975 ortholog_one2one 19 retrogenes
retro_rnor_1, retro_rnor_1038, retro_rnor_1631, retro_rnor_1812, retro_rnor_1830, retro_rnor_1876, retro_rnor_1893, retro_rnor_1946, retro_rnor_1975, retro_rnor_2211, retro_rnor_2598, retro_rnor_2636, retro_rnor_2666, retro_rnor_2736, retro_rnor_739, retro_rnor_745, retro_rnor_753, retro_rnor_761, retro_rnor_940,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_59 86.49 95.65
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2. retro_eeur_69 85.09 98.26
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3. retro_eeur_83 99.13 100.00
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4. retro_eeur_137 71.17 94.78
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5. retro_eeur_214 97.41 100.00
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6. retro_eeur_237 81.51 100.00
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7. retro_eeur_355 97.75 76.52
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8. retro_eeur_432 85.09 98.26
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9. retro_eeur_614 92.24 100.00
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Download FASTA sequences of all ENSEEUG00000000964 retrocopies