RetrogeneDB ID: | retro_eeur_214 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_211169:702..1046(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSEEUG00000000964 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 97.41 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVAAKKTK-KSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKT |
MVAA.KTK.KSLESINSRLQLVMKS.KYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKT | |
Retrocopy | MVAANKTK<KSLESINSRLQLVMKSRKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKT |
Parental | GVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
GVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK | |
Retrocopy | GVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 22 .24 RPM | 22 .40 RPM |
SRP017611_kidney | 60 .95 RPM | 52 .51 RPM |
SRP017611_liver | 45 .98 RPM | 30 .39 RPM |